miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25897 3' -65.5 NC_005337.1 + 111425 0.66 0.490663
Target:  5'- uGCCACGUacguaGCGUCGGUaaaGCGCcAGAa -3'
miRNA:   3'- gCGGUGCG-----CGCGGCCGcg-CGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 49800 0.66 0.490663
Target:  5'- gGUCACGUcgcugacggagGUGCCGGcCGCGCccuccGCGGGc -3'
miRNA:   3'- gCGGUGCG-----------CGCGGCC-GCGCG-----CGCUCu -5'
25897 3' -65.5 NC_005337.1 + 1638 0.66 0.490663
Target:  5'- gGUCgauGCGCGCGCCcGCG-GCGaCGAGc -3'
miRNA:   3'- gCGG---UGCGCGCGGcCGCgCGC-GCUCu -5'
25897 3' -65.5 NC_005337.1 + 34805 0.66 0.490663
Target:  5'- gGCCACGaagacgcccuCGCGCaCGcGCGCGUccaCGAGGu -3'
miRNA:   3'- gCGGUGC----------GCGCG-GC-CGCGCGc--GCUCU- -5'
25897 3' -65.5 NC_005337.1 + 122441 0.66 0.490663
Target:  5'- gGCaCAUGCaCGCCGacuucaucGCGCaGUGCGAGGc -3'
miRNA:   3'- gCG-GUGCGcGCGGC--------CGCG-CGCGCUCU- -5'
25897 3' -65.5 NC_005337.1 + 122532 0.66 0.490663
Target:  5'- gGcCCugGCGCGgCGaCGCGCGCu--- -3'
miRNA:   3'- gC-GGugCGCGCgGCcGCGCGCGcucu -5'
25897 3' -65.5 NC_005337.1 + 68146 0.66 0.490663
Target:  5'- cCGuCCACGCGC-UUGGacuugaacuccaCGCGCGCGcAGAc -3'
miRNA:   3'- -GC-GGUGCGCGcGGCC------------GCGCGCGC-UCU- -5'
25897 3' -65.5 NC_005337.1 + 58377 0.66 0.490663
Target:  5'- -uUCGCGCGCaacGUCGGCGgGCGCa--- -3'
miRNA:   3'- gcGGUGCGCG---CGGCCGCgCGCGcucu -5'
25897 3' -65.5 NC_005337.1 + 75264 0.66 0.490663
Target:  5'- gCGCCACGaC-CGCaCGGCgcucuugauGCGCGCGuAGc -3'
miRNA:   3'- -GCGGUGC-GcGCG-GCCG---------CGCGCGC-UCu -5'
25897 3' -65.5 NC_005337.1 + 81361 0.66 0.490663
Target:  5'- uCGCCGaggaucCGUGCGCgguuCGGCuGCGaCGCGAuGAg -3'
miRNA:   3'- -GCGGU------GCGCGCG----GCCG-CGC-GCGCU-CU- -5'
25897 3' -65.5 NC_005337.1 + 22343 0.66 0.489763
Target:  5'- aGCUACGCGUacucggaggugaaGCaGGgGCGCGUGAa- -3'
miRNA:   3'- gCGGUGCGCG-------------CGgCCgCGCGCGCUcu -5'
25897 3' -65.5 NC_005337.1 + 130505 0.66 0.487966
Target:  5'- gCGCCugcuCGUGgGaggucauggaguucCUGGUGCGCGCGGGc -3'
miRNA:   3'- -GCGGu---GCGCgC--------------GGCCGCGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 29692 0.66 0.4817
Target:  5'- uCGCCGC-CGaCGaCCGGaCGgaCGCGCGAGn -3'
miRNA:   3'- -GCGGUGcGC-GC-GGCC-GC--GCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 65310 0.66 0.4817
Target:  5'- aGUCGgGCGacuggaagggcaCGCCGGUGCcgccGCGCGGGu -3'
miRNA:   3'- gCGGUgCGC------------GCGGCCGCG----CGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 95615 0.66 0.4817
Target:  5'- gCGCCAUgGCgGCGUCcGUGgGCGCGGGc -3'
miRNA:   3'- -GCGGUG-CG-CGCGGcCGCgCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 64940 0.66 0.4817
Target:  5'- ---aGCGCGCGCCGugauccGCGUGUGCaAGAa -3'
miRNA:   3'- gcggUGCGCGCGGC------CGCGCGCGcUCU- -5'
25897 3' -65.5 NC_005337.1 + 28856 0.66 0.4817
Target:  5'- cCGCgAUGCacccgacgGCGaUCaGCGCGCGCGAGu -3'
miRNA:   3'- -GCGgUGCG--------CGC-GGcCGCGCGCGCUCu -5'
25897 3' -65.5 NC_005337.1 + 65954 0.66 0.4817
Target:  5'- gGCaCGCGCGUGCCgcccuccucgGGCaCGCGCGu-- -3'
miRNA:   3'- gCG-GUGCGCGCGG----------CCGcGCGCGCucu -5'
25897 3' -65.5 NC_005337.1 + 95336 0.66 0.4817
Target:  5'- gCGCguCGCaguaGCGCCGGaGCGC-CGAGu -3'
miRNA:   3'- -GCGguGCG----CGCGGCCgCGCGcGCUCu -5'
25897 3' -65.5 NC_005337.1 + 39584 0.66 0.4817
Target:  5'- gGCCGCGUGUucgugcccgaGCCcuucGGCGgGCGgGAGc -3'
miRNA:   3'- gCGGUGCGCG----------CGG----CCGCgCGCgCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.