miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 3' -60.3 NC_005337.1 + 123125 0.66 0.721247
Target:  5'- -gCACGuCGUGCG-GCGCC-CGucGCg -3'
miRNA:   3'- cgGUGC-GCGCGCaCGCGGaGCuuCGa -5'
25902 3' -60.3 NC_005337.1 + 4040 0.66 0.721247
Target:  5'- -aCGCGUGCaGCG-GCGUCUUGucGAGCg -3'
miRNA:   3'- cgGUGCGCG-CGCaCGCGGAGC--UUCGa -5'
25902 3' -60.3 NC_005337.1 + 124043 0.66 0.721247
Target:  5'- gGCCGCGCGCcUGccGCGgCU-GGAGCUg -3'
miRNA:   3'- -CGGUGCGCGcGCa-CGCgGAgCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 34004 0.66 0.721247
Target:  5'- cGCCucuuGCGCGCGCGguagGUGCUccCGGucauGGCg -3'
miRNA:   3'- -CGG----UGCGCGCGCa---CGCGGa-GCU----UCGa -5'
25902 3' -60.3 NC_005337.1 + 107149 0.66 0.721247
Target:  5'- gGUCACGCugcuGCGCGUG-GCCaaGcGGCUg -3'
miRNA:   3'- -CGGUGCG----CGCGCACgCGGagCuUCGA- -5'
25902 3' -60.3 NC_005337.1 + 52103 0.66 0.721247
Target:  5'- gGCCGCGUGCaG-GUGCGCgaCGGgccGGCc -3'
miRNA:   3'- -CGGUGCGCG-CgCACGCGgaGCU---UCGa -5'
25902 3' -60.3 NC_005337.1 + 101003 0.66 0.721247
Target:  5'- cGCCACGCuCGCG-G-GCCUCuGGauGGCg -3'
miRNA:   3'- -CGGUGCGcGCGCaCgCGGAG-CU--UCGa -5'
25902 3' -60.3 NC_005337.1 + 88047 0.66 0.721247
Target:  5'- cGCCACGCugauCGCGUacGUGCUcgUCGGcgAGCUc -3'
miRNA:   3'- -CGGUGCGc---GCGCA--CGCGG--AGCU--UCGA- -5'
25902 3' -60.3 NC_005337.1 + 13169 0.66 0.721247
Target:  5'- uCCGCggGCGcCGCGUcCGCCUCGcGGUUc -3'
miRNA:   3'- cGGUG--CGC-GCGCAcGCGGAGCuUCGA- -5'
25902 3' -60.3 NC_005337.1 + 15471 0.66 0.720276
Target:  5'- gGCCaccgacgGCGCGCGCGgcacgacgGCGCCgcCGccGGCg -3'
miRNA:   3'- -CGG-------UGCGCGCGCa-------CGCGGa-GCu-UCGa -5'
25902 3' -60.3 NC_005337.1 + 5497 0.66 0.718331
Target:  5'- aUCGCGCGCaccCGUgcuaccagguucgcGCGCCggCGGAGCUc -3'
miRNA:   3'- cGGUGCGCGc--GCA--------------CGCGGa-GCUUCGA- -5'
25902 3' -60.3 NC_005337.1 + 122799 0.66 0.715409
Target:  5'- uGCUGCGCGCggccaucgaccgcaGCGUGCGCgUccgcgugaucgugaCGGAGUg -3'
miRNA:   3'- -CGGUGCGCG--------------CGCACGCGgA--------------GCUUCGa -5'
25902 3' -60.3 NC_005337.1 + 103949 0.66 0.711504
Target:  5'- aCCGCGaGCGCGUGCGCucCUCc--GCg -3'
miRNA:   3'- cGGUGCgCGCGCACGCG--GAGcuuCGa -5'
25902 3' -60.3 NC_005337.1 + 4973 0.66 0.711504
Target:  5'- uGCCggaGCGCGCGCccccaccaGCauuGCCUCGAgcAGCg -3'
miRNA:   3'- -CGG---UGCGCGCGca------CG---CGGAGCU--UCGa -5'
25902 3' -60.3 NC_005337.1 + 5988 0.66 0.711504
Target:  5'- gGCCagGCGCGCGCGuUGCagaccGCCgCGugcAGCg -3'
miRNA:   3'- -CGG--UGCGCGCGC-ACG-----CGGaGCu--UCGa -5'
25902 3' -60.3 NC_005337.1 + 8000 0.66 0.711504
Target:  5'- uCUGCGCGUGCGUG-GCUaUCGcGGCg -3'
miRNA:   3'- cGGUGCGCGCGCACgCGG-AGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 24494 0.66 0.711504
Target:  5'- aCCugGUGCGCGgcgaCGCgCUCG-AGCc -3'
miRNA:   3'- cGGugCGCGCGCac--GCG-GAGCuUCGa -5'
25902 3' -60.3 NC_005337.1 + 34055 0.66 0.711504
Target:  5'- aUCACGCGCacGCG-GCGCCggccgUCGuaGAGCa -3'
miRNA:   3'- cGGUGCGCG--CGCaCGCGG-----AGC--UUCGa -5'
25902 3' -60.3 NC_005337.1 + 82260 0.66 0.711504
Target:  5'- aCCGCGCGCGCGcgGCcGUC-CGucacGGCg -3'
miRNA:   3'- cGGUGCGCGCGCa-CG-CGGaGCu---UCGa -5'
25902 3' -60.3 NC_005337.1 + 46452 0.66 0.711504
Target:  5'- cGCgAucUGCGCGCGgcGCGCCggCG-AGCUc -3'
miRNA:   3'- -CGgU--GCGCGCGCa-CGCGGa-GCuUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.