miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 3' -58.9 NC_005337.1 + 32810 0.66 0.806101
Target:  5'- uGCGC-CugGUCCaCGCAc--UCGCGCc -3'
miRNA:   3'- -CGCGuGugCAGG-GCGUcaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 66289 0.66 0.806101
Target:  5'- gGCGCACGCGccgaCCCu--GgaCCGCGUGa -3'
miRNA:   3'- -CGCGUGUGCa---GGGcguCaaGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 29796 0.66 0.806101
Target:  5'- cCGCuGCGCGUgcUCCGCGuGcUCCGCGUa -3'
miRNA:   3'- cGCG-UGUGCA--GGGCGU-CaAGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 96963 0.66 0.806101
Target:  5'- cCGCGCGCGaccagcUCCuCGCGG--CCGgGCGg -3'
miRNA:   3'- cGCGUGUGC------AGG-GCGUCaaGGCgCGC- -5'
25914 3' -58.9 NC_005337.1 + 130148 0.66 0.806101
Target:  5'- cGCGCGCugGcgCUCGCgcgcuuucggAGgccgUgCGCGCGg -3'
miRNA:   3'- -CGCGUGugCa-GGGCG----------UCa---AgGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 118571 0.66 0.806101
Target:  5'- uCGCACgACGUCCgGCAcg-UCGUGCu -3'
miRNA:   3'- cGCGUG-UGCAGGgCGUcaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 6994 0.66 0.806101
Target:  5'- cCGUGCuuGUCCauggCGCGGacgUCCGCGCc -3'
miRNA:   3'- cGCGUGugCAGG----GCGUCa--AGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 5569 0.66 0.806101
Target:  5'- aCGCAgCGCG-CUCGCAGaucagCUGCGCu -3'
miRNA:   3'- cGCGU-GUGCaGGGCGUCaa---GGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 25633 0.66 0.806101
Target:  5'- cGCGCGguCG-CCCGCcacggCCGCGuCGa -3'
miRNA:   3'- -CGCGUguGCaGGGCGucaa-GGCGC-GC- -5'
25914 3' -58.9 NC_005337.1 + 118482 0.66 0.806101
Target:  5'- -aGCacgGCAUGuUCCCgGCGGUgaCCGUGCGg -3'
miRNA:   3'- cgCG---UGUGC-AGGG-CGUCAa-GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 104607 0.66 0.806101
Target:  5'- -aGCAUACGgcgccaCCGCGGgagCaCGCGCa -3'
miRNA:   3'- cgCGUGUGCag----GGCGUCaa-G-GCGCGc -5'
25914 3' -58.9 NC_005337.1 + 118154 0.66 0.806101
Target:  5'- cCGUACAucguCGUCCUGCGGcggUCCGUaagcugcaGCGa -3'
miRNA:   3'- cGCGUGU----GCAGGGCGUCa--AGGCG--------CGC- -5'
25914 3' -58.9 NC_005337.1 + 4110 0.66 0.806101
Target:  5'- cGCGCGCACGgCCuccgaaagcgCGCgAGcgCCaGCGCGc -3'
miRNA:   3'- -CGCGUGUGCaGG----------GCG-UCaaGG-CGCGC- -5'
25914 3' -58.9 NC_005337.1 + 58644 0.66 0.806101
Target:  5'- cGCGCccauCACGacggCCCGCGcGUccUCgGCGCu -3'
miRNA:   3'- -CGCGu---GUGCa---GGGCGU-CA--AGgCGCGc -5'
25914 3' -58.9 NC_005337.1 + 133153 0.66 0.806101
Target:  5'- uCGCGCGCGUgCUGCGGcugcucCCG-GCGg -3'
miRNA:   3'- cGCGUGUGCAgGGCGUCaa----GGCgCGC- -5'
25914 3' -58.9 NC_005337.1 + 80140 0.66 0.805234
Target:  5'- cGCGaCACGCGgcUCCCGUAcuacugcugguacGggCCGUGCc -3'
miRNA:   3'- -CGC-GUGUGC--AGGGCGU-------------CaaGGCGCGc -5'
25914 3' -58.9 NC_005337.1 + 7961 0.66 0.804365
Target:  5'- aCGCACAUGugagaaaucuccUCCCGCAcagggcgauuaUCUGCGCGu -3'
miRNA:   3'- cGCGUGUGC------------AGGGCGUca---------AGGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 742 0.66 0.800875
Target:  5'- gGCGagaGCGCGgcgCCCGCGGccucgacggcggccaUgugCUGCGCGc -3'
miRNA:   3'- -CGCg--UGUGCa--GGGCGUC---------------Aa--GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 742 0.66 0.800875
Target:  5'- gGCGagaGCGCGgcgCCCGCGGccucgacggcggccaUgugCUGCGCGc -3'
miRNA:   3'- -CGCg--UGUGCa--GGGCGUC---------------Aa--GGCGCGC- -5'
25914 3' -58.9 NC_005337.1 + 45309 0.66 0.797361
Target:  5'- uCGCACAcCGggaCCGCGcccuccgccUCCGCGCGg -3'
miRNA:   3'- cGCGUGU-GCag-GGCGUca-------AGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.