miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25914 5' -55.3 NC_005337.1 + 112465 0.66 0.930651
Target:  5'- cGCGCACGAagaGCUgcggcgcGUCGaaggCGGCCc -3'
miRNA:   3'- uCGCGUGCU---UGAa------CAGCccuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 5972 0.66 0.930651
Target:  5'- cGCGCGCGAGCaga-CGGGccaGGCg -3'
miRNA:   3'- uCGCGUGCUUGaacaGCCCuagCCGg -5'
25914 5' -55.3 NC_005337.1 + 41959 0.66 0.930651
Target:  5'- uGCGCGCGAgcaGCUUGUCGuuGAcCGuCCg -3'
miRNA:   3'- uCGCGUGCU---UGAACAGCc-CUaGCcGG- -5'
25914 5' -55.3 NC_005337.1 + 40732 0.66 0.925352
Target:  5'- uGCGC-CGGACUcgcGUCucuGGGugcaCGGCCg -3'
miRNA:   3'- uCGCGuGCUUGAa--CAG---CCCua--GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 44460 0.66 0.925352
Target:  5'- gAGCGCcucgcCGAGCUggagGccaguUCGaGGcgCGGCCg -3'
miRNA:   3'- -UCGCGu----GCUUGAa---C-----AGC-CCuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 2628 0.66 0.925352
Target:  5'- cGCGCACGGGCUccUCGaagcGGAagguggcgcCGGCCg -3'
miRNA:   3'- uCGCGUGCUUGAacAGC----CCUa--------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 108552 0.66 0.925352
Target:  5'- gGGCGCGCGccuGACgcuggCGGcg-CGGCCg -3'
miRNA:   3'- -UCGCGUGC---UUGaaca-GCCcuaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 52029 0.66 0.922057
Target:  5'- cGCGCGCGGucauggaguuccgggACcUG-CGGGAgcugguUCGGCUc -3'
miRNA:   3'- uCGCGUGCU---------------UGaACaGCCCU------AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 109079 0.66 0.919812
Target:  5'- cAGCGCgACGAACaUGgccgCGGccgaGGCCa -3'
miRNA:   3'- -UCGCG-UGCUUGaACa---GCCcuagCCGG- -5'
25914 5' -55.3 NC_005337.1 + 74180 0.66 0.919812
Target:  5'- aGGCGCGCu--CggGcCGGGAgUCGGCg -3'
miRNA:   3'- -UCGCGUGcuuGaaCaGCCCU-AGCCGg -5'
25914 5' -55.3 NC_005337.1 + 62485 0.66 0.919812
Target:  5'- uGCGCucCGAcCUcGggCGGGG-CGGCCg -3'
miRNA:   3'- uCGCGu-GCUuGAaCa-GCCCUaGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 50470 0.66 0.919812
Target:  5'- uGGCGCGCccGACgggUGgCGGGucUCGGUCu -3'
miRNA:   3'- -UCGCGUGc-UUGa--ACaGCCCu-AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 63670 0.66 0.919812
Target:  5'- cGUcCACGAGCaUGUCGcGGAugUUGGUCu -3'
miRNA:   3'- uCGcGUGCUUGaACAGC-CCU--AGCCGG- -5'
25914 5' -55.3 NC_005337.1 + 8246 0.66 0.919812
Target:  5'- cGCGCAUGAgacacacgcACgcg-CGGGGguugaacgCGGCCg -3'
miRNA:   3'- uCGCGUGCU---------UGaacaGCCCUa-------GCCGG- -5'
25914 5' -55.3 NC_005337.1 + 76116 0.66 0.919812
Target:  5'- uGCGCACGcGCUUGcgCGcGAa-GGCCg -3'
miRNA:   3'- uCGCGUGCuUGAACa-GCcCUagCCGG- -5'
25914 5' -55.3 NC_005337.1 + 51131 0.66 0.919812
Target:  5'- gAGCGCaccgacgagcagGCGAACUcGUCguacaaggagguGGGGUCcaaccuGGCCa -3'
miRNA:   3'- -UCGCG------------UGCUUGAaCAG------------CCCUAG------CCGG- -5'
25914 5' -55.3 NC_005337.1 + 56118 0.66 0.918103
Target:  5'- aGGCGCACGGcaucgccagcgugcGCggcgUGcagCGGGG-CGGCa -3'
miRNA:   3'- -UCGCGUGCU--------------UGa---ACa--GCCCUaGCCGg -5'
25914 5' -55.3 NC_005337.1 + 91514 0.66 0.918103
Target:  5'- gAGCaCACGAACgcg-CGGGAcccgcaccgcacgcUCGGCg -3'
miRNA:   3'- -UCGcGUGCUUGaacaGCCCU--------------AGCCGg -5'
25914 5' -55.3 NC_005337.1 + 77786 0.66 0.91462
Target:  5'- gGGC-CACGAACUUGgcgauauccuggcgcCGcGGGUCgcuGGCCa -3'
miRNA:   3'- -UCGcGUGCUUGAACa--------------GC-CCUAG---CCGG- -5'
25914 5' -55.3 NC_005337.1 + 54084 0.66 0.914031
Target:  5'- gAGaCGCGCGAGCUggacggcgUGUaCGGGcgCuGCUa -3'
miRNA:   3'- -UC-GCGUGCUUGA--------ACA-GCCCuaGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.