miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 83972 0.66 0.999438
Target:  5'- gGCAGCGGcg-GCGCgggcgggCACGUCu -3'
miRNA:   3'- -CGUUGCCccaUGCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 38335 0.66 0.999438
Target:  5'- gGCGcCGGGcgaGUACGCgcugcgcaUCACGCa -3'
miRNA:   3'- -CGUuGCCC---CAUGCGaaaaa---AGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 131028 0.66 0.999438
Target:  5'- cGCAACGacaaGGcGUGCGCgcgccucCugGCCc -3'
miRNA:   3'- -CGUUGC----CC-CAUGCGaaaaaa-GugCGG- -5'
25939 5' -48.3 NC_005337.1 + 40684 0.66 0.999386
Target:  5'- gGCGACGGcGGUAUcuCUUccuccggaaugCACGCCu -3'
miRNA:   3'- -CGUUGCC-CCAUGc-GAAaaaa-------GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 78563 0.66 0.999386
Target:  5'- aGCAGCGGGuuGUGgGCcuccauggGCGCCg -3'
miRNA:   3'- -CGUUGCCC--CAUgCGaaaaaag-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 125360 0.66 0.999345
Target:  5'- aCGGCGGGGacccagacucuguagACGCggc---CGCGCCu -3'
miRNA:   3'- cGUUGCCCCa--------------UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 80047 0.66 0.999331
Target:  5'- cGCuggcGCGGcGG-ACGCUgucaucCGCGCCc -3'
miRNA:   3'- -CGu---UGCC-CCaUGCGAaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 84893 0.66 0.999331
Target:  5'- gGCcGCGGGGgGCGgUgcggcggUCGcCGCCu -3'
miRNA:   3'- -CGuUGCCCCaUGCgAaaaa---AGU-GCGG- -5'
25939 5' -48.3 NC_005337.1 + 95014 0.66 0.999331
Target:  5'- aCAGCGGcGGcugcUGCGCguucUUCACGUa -3'
miRNA:   3'- cGUUGCC-CC----AUGCGaaaaAAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 64227 0.66 0.999331
Target:  5'- cGCGACGGGcaGCGCcucUUUgcgGCGCUg -3'
miRNA:   3'- -CGUUGCCCcaUGCGaa-AAAag-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 123177 0.66 0.999331
Target:  5'- --uACGGagaGGUGCGCgug---UACGCCg -3'
miRNA:   3'- cguUGCC---CCAUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 103301 0.66 0.999331
Target:  5'- cGCAugaACGaGGUGCGCaucaacUUCgGCGCCg -3'
miRNA:   3'- -CGU---UGCcCCAUGCGaaaa--AAG-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 72235 0.66 0.999331
Target:  5'- -aGugGGGGcGCGCcUUcgUagACGCCa -3'
miRNA:   3'- cgUugCCCCaUGCG-AAaaAagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 85994 0.66 0.999331
Target:  5'- cGCGAcCGcGGGUccagcCGCaggugcgUCACGCCg -3'
miRNA:   3'- -CGUU-GC-CCCAu----GCGaaaaa--AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 132814 0.66 0.999331
Target:  5'- gGCAguGCGuGGcGUACGUgg---UCGCGCa -3'
miRNA:   3'- -CGU--UGC-CC-CAUGCGaaaaaAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 29099 0.66 0.999331
Target:  5'- cGCGAagcaGGGGUcgaccACGCcgUgca-GCGCCa -3'
miRNA:   3'- -CGUUg---CCCCA-----UGCGaaAaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 52118 0.66 0.99924
Target:  5'- cGCGACGGGccggccauggccuucGUggACGCgug--UCGCGCg -3'
miRNA:   3'- -CGUUGCCC---------------CA--UGCGaaaaaAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 23432 0.66 0.999174
Target:  5'- uCAACGGGc-GCGCgagcaUCACGCa -3'
miRNA:   3'- cGUUGCCCcaUGCGaaaaaAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 38564 0.66 0.999174
Target:  5'- ---cCGGGGU-CGCUgcug-CGCGCg -3'
miRNA:   3'- cguuGCCCCAuGCGAaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 117286 0.66 0.999174
Target:  5'- uCGGCGGGGUcccGCGUgcuggaggUggACGCCu -3'
miRNA:   3'- cGUUGCCCCA---UGCGaaaa----AagUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.