miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 5' -63 NC_005337.1 + 68144 0.66 0.618685
Target:  5'- cGCGcGCGCCccuagcggGCGGCGGAUcuUCGUggcCGAg -3'
miRNA:   3'- cUGC-CGCGG--------CGCCGCCUG--GGCAa--GCU- -5'
25942 5' -63 NC_005337.1 + 11921 0.66 0.618685
Target:  5'- -gUGGCGuCCGauGCGGcACCCGggCGc -3'
miRNA:   3'- cuGCCGC-GGCgcCGCC-UGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 6474 0.66 0.618685
Target:  5'- uGGCGGUGaCCaGCGcGCGGACgaGgaggUCGAu -3'
miRNA:   3'- -CUGCCGC-GG-CGC-CGCCUGggCa---AGCU- -5'
25942 5' -63 NC_005337.1 + 50986 0.66 0.618685
Target:  5'- --gGGCGCCGC-GCGuucgucgucGGCCCGgcccUCGAg -3'
miRNA:   3'- cugCCGCGGCGcCGC---------CUGGGCa---AGCU- -5'
25942 5' -63 NC_005337.1 + 35790 0.66 0.618685
Target:  5'- uGACGGaCGCCGcCGGCGcGCCCc----- -3'
miRNA:   3'- -CUGCC-GCGGC-GCCGCcUGGGcaagcu -5'
25942 5' -63 NC_005337.1 + 14906 0.66 0.61771
Target:  5'- cGCGGCGCCGaUGGUGGAagcagcuCUCGUggUGGc -3'
miRNA:   3'- cUGCCGCGGC-GCCGCCU-------GGGCAa-GCU- -5'
25942 5' -63 NC_005337.1 + 19100 0.66 0.612838
Target:  5'- aGGCGGaCGCCgGCGuccGCGGGCgCCGgcaucuccagguggUCGAa -3'
miRNA:   3'- -CUGCC-GCGG-CGC---CGCCUG-GGCa-------------AGCU- -5'
25942 5' -63 NC_005337.1 + 104684 0.66 0.608943
Target:  5'- cAUGGCGuCCGCGuCGGACaCCGc-CGAg -3'
miRNA:   3'- cUGCCGC-GGCGCcGCCUG-GGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 82376 0.66 0.608943
Target:  5'- cACGGCGCCGa---GGGCCuCGUcgUCGGg -3'
miRNA:   3'- cUGCCGCGGCgccgCCUGG-GCA--AGCU- -5'
25942 5' -63 NC_005337.1 + 81477 0.66 0.608943
Target:  5'- --aGGUccGCCGUGGUGGGCuCCGUguucacgCGGu -3'
miRNA:   3'- cugCCG--CGGCGCCGCCUG-GGCAa------GCU- -5'
25942 5' -63 NC_005337.1 + 101076 0.66 0.608943
Target:  5'- aGGCGcGCcccGCCGuCGGgaGGGCCCGUcCGGc -3'
miRNA:   3'- -CUGC-CG---CGGC-GCCg-CCUGGGCAaGCU- -5'
25942 5' -63 NC_005337.1 + 123133 0.66 0.608943
Target:  5'- uGCGGCGcCCGUcGCGGugCgUGUUCa- -3'
miRNA:   3'- cUGCCGC-GGCGcCGCCugG-GCAAGcu -5'
25942 5' -63 NC_005337.1 + 68492 0.66 0.608943
Target:  5'- --gGGCGCCGCgcugcuGGCGGccgugggugcGCCCGcgcUCGGc -3'
miRNA:   3'- cugCCGCGGCG------CCGCC----------UGGGCa--AGCU- -5'
25942 5' -63 NC_005337.1 + 65145 0.66 0.608943
Target:  5'- aGGCGGcCGCCGUGgaccGCGGcucGCCCGcagaCGAg -3'
miRNA:   3'- -CUGCC-GCGGCGC----CGCC---UGGGCaa--GCU- -5'
25942 5' -63 NC_005337.1 + 29975 0.66 0.599217
Target:  5'- aGCGcCGCCGCGcccucGCGGaccGCCCGcgCGAa -3'
miRNA:   3'- cUGCcGCGGCGC-----CGCC---UGGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 29561 0.66 0.599217
Target:  5'- -cCGcCGCCGCGGCGGcgGCCCucgUUGGc -3'
miRNA:   3'- cuGCcGCGGCGCCGCC--UGGGca-AGCU- -5'
25942 5' -63 NC_005337.1 + 127369 0.66 0.599217
Target:  5'- -cUGcGCGCCG-GcGCGGACCCGcgCGc -3'
miRNA:   3'- cuGC-CGCGGCgC-CGCCUGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 929 0.66 0.599217
Target:  5'- cGGCGGCGagGCGGCGGAgCgCGgaCa- -3'
miRNA:   3'- -CUGCCGCggCGCCGCCUgG-GCaaGcu -5'
25942 5' -63 NC_005337.1 + 57269 0.66 0.599217
Target:  5'- cACGGgGCCGC-GCGGGgCCGgcgCGc -3'
miRNA:   3'- cUGCCgCGGCGcCGCCUgGGCaa-GCu -5'
25942 5' -63 NC_005337.1 + 83914 0.66 0.599217
Target:  5'- gGGCGGCGCCuGCuGGCccaGGCUCGgcCGGg -3'
miRNA:   3'- -CUGCCGCGG-CG-CCGc--CUGGGCaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.