miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 988 0.66 0.601609
Target:  5'- uGGCGcGGCGCG-CGgaggGCGGgcguCGCCUGg -3'
miRNA:   3'- gCCGC-UCGUGCaGCa---CGCC----GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 83883 0.66 0.601609
Target:  5'- aCGcGCG-GCGCGccccCGcGCcaGGCGCCCGUg -3'
miRNA:   3'- -GC-CGCuCGUGCa---GCaCG--CCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 40487 0.66 0.601609
Target:  5'- -cGCGAcCACGUCGUaGCG-CGUCCGg -3'
miRNA:   3'- gcCGCUcGUGCAGCA-CGCcGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 133053 0.66 0.601609
Target:  5'- gGGCccgaucuccgaGAGCGCGUgGUcgaaauGC-GCGCCCGUg -3'
miRNA:   3'- gCCG-----------CUCGUGCAgCA------CGcCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 15706 0.66 0.601609
Target:  5'- aCGaCGuGCcggACGUCGUGCGaGCGCgCGa -3'
miRNA:   3'- -GCcGCuCG---UGCAGCACGC-CGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 988 0.66 0.601609
Target:  5'- uGGCGcGGCGCG-CGgaggGCGGgcguCGCCUGg -3'
miRNA:   3'- gCCGC-UCGUGCaGCa---CGCC----GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 12445 0.66 0.601609
Target:  5'- --aCGAGCACGUCG-GcCGGCGUcauaCCGa -3'
miRNA:   3'- gccGCUCGUGCAGCaC-GCCGCG----GGCa -5'
25951 5' -63.1 NC_005337.1 + 69038 0.66 0.595765
Target:  5'- uGGCGugcaggGGUACGcCGgguacgaccuggacGCGGUGCCCGg -3'
miRNA:   3'- gCCGC------UCGUGCaGCa-------------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 108927 0.66 0.591873
Target:  5'- -aGCGAGaCGCGcCGcgacGUGGCGCCCu- -3'
miRNA:   3'- gcCGCUC-GUGCaGCa---CGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 64298 0.66 0.591873
Target:  5'- aCGGCGGucGCguccgGCGUCuUGCGcGUGCCCa- -3'
miRNA:   3'- -GCCGCU--CG-----UGCAGcACGC-CGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 50229 0.66 0.591873
Target:  5'- --cCGAGgGCGUCGUGCG-CGCCUc- -3'
miRNA:   3'- gccGCUCgUGCAGCACGCcGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 65769 0.66 0.589929
Target:  5'- aGcGCGGGCGCacccaCGgccgccagcagcGCGGCGCCCGg -3'
miRNA:   3'- gC-CGCUCGUGca---GCa-----------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 102776 0.66 0.582165
Target:  5'- aGGuCGAGCGCGUCGaagGGUgaGCCUGUu -3'
miRNA:   3'- gCC-GCUCGUGCAGCacgCCG--CGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 96173 0.66 0.582165
Target:  5'- aGGagccCGAGCACGauguacaugagCGUgGUGGCGCCCa- -3'
miRNA:   3'- gCC----GCUCGUGCa----------GCA-CGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 39652 0.66 0.582165
Target:  5'- gCGGCGcGGC-CG-CGUGgGGCGCgUGg -3'
miRNA:   3'- -GCCGC-UCGuGCaGCACgCCGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 63252 0.66 0.581195
Target:  5'- gGGCccuugucGAGCACGUcCGUGagcaCGGUcuGCCCGg -3'
miRNA:   3'- gCCG-------CUCGUGCA-GCAC----GCCG--CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 50177 0.66 0.579258
Target:  5'- aCGGCGAccgcgcccguguccGCGC-UC-UGCGGCGCgCGUc -3'
miRNA:   3'- -GCCGCU--------------CGUGcAGcACGCCGCGgGCA- -5'
25951 5' -63.1 NC_005337.1 + 106212 0.66 0.572488
Target:  5'- uGGaGAGCACGUUGUuuuucuccaugGCGGCGgUCGc -3'
miRNA:   3'- gCCgCUCGUGCAGCA-----------CGCCGCgGGCa -5'
25951 5' -63.1 NC_005337.1 + 93273 0.66 0.572488
Target:  5'- uGGCGAGgC-CGggggugCGU-CGGCGCCUGg -3'
miRNA:   3'- gCCGCUC-GuGCa-----GCAcGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 83901 0.66 0.572488
Target:  5'- cCGcCGGGUACGggg-GCGGCGCCUGc -3'
miRNA:   3'- -GCcGCUCGUGCagcaCGCCGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.