miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26019 5' -50.9 NC_005342.2 + 39404 0.66 0.931489
Target:  5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3'
miRNA:   3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 11786 0.66 0.931489
Target:  5'- aCGaCGCG-GCCaUCaGCGCGACGGCGc -3'
miRNA:   3'- aGCaGUGCuUGG-AGcUGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 25184 0.66 0.931489
Target:  5'- gCGUCuCGAACucacugcgcgaCUCGACGuCGACGcccGCGa -3'
miRNA:   3'- aGCAGuGCUUG-----------GAGCUGU-GCUGU---UGC- -5'
26019 5' -50.9 NC_005342.2 + 43903 0.66 0.931489
Target:  5'- aCGUUcCGGcGCC-CGGCAUGGCGACc -3'
miRNA:   3'- aGCAGuGCU-UGGaGCUGUGCUGUUGc -5'
26019 5' -50.9 NC_005342.2 + 41206 0.66 0.931489
Target:  5'- gUCGUaUGCGAucggcuACCUCGAgGCGcGCGACc -3'
miRNA:   3'- -AGCA-GUGCU------UGGAGCUgUGC-UGUUGc -5'
26019 5' -50.9 NC_005342.2 + 32171 0.66 0.931489
Target:  5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3'
miRNA:   3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5'
26019 5' -50.9 NC_005342.2 + 19300 0.66 0.925726
Target:  5'- ---aCGCGuGCCUCGGCGCGcCGcuGCGc -3'
miRNA:   3'- agcaGUGCuUGGAGCUGUGCuGU--UGC- -5'
26019 5' -50.9 NC_005342.2 + 2754 0.66 0.925726
Target:  5'- uUCGUCACG-ACCgUGAaGCGAUuGCGc -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUgUGCUGuUGC- -5'
26019 5' -50.9 NC_005342.2 + 25142 0.66 0.925726
Target:  5'- aCGuUCACGAGCgaCaGCGCGACGAa- -3'
miRNA:   3'- aGC-AGUGCUUGgaGcUGUGCUGUUgc -5'
26019 5' -50.9 NC_005342.2 + 13330 0.66 0.919674
Target:  5'- aCGgugUACGGGCg-CGGCACGAgCGGCGu -3'
miRNA:   3'- aGCa--GUGCUUGgaGCUGUGCU-GUUGC- -5'
26019 5' -50.9 NC_005342.2 + 17380 0.66 0.919053
Target:  5'- aCGUC-CGAggagaaccgccagGCgCUCGACGCGuucuACGACGc -3'
miRNA:   3'- aGCAGuGCU-------------UG-GAGCUGUGC----UGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 24728 0.66 0.919053
Target:  5'- cCGUCAuCGGucgagaaGCCgcucaCGaACGCGGCGACGa -3'
miRNA:   3'- aGCAGU-GCU-------UGGa----GC-UGUGCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 9541 0.66 0.919053
Target:  5'- aUCGUgGCGAguucguugccgccACCUucagcgccagcCGGCGCGGCAuCGg -3'
miRNA:   3'- -AGCAgUGCU-------------UGGA-----------GCUGUGCUGUuGC- -5'
26019 5' -50.9 NC_005342.2 + 19641 0.66 0.919053
Target:  5'- aCGUCgcauccgaACGAGCCUCGAUucaugcuggauugACGAUAGa- -3'
miRNA:   3'- aGCAG--------UGCUUGGAGCUG-------------UGCUGUUgc -5'
26019 5' -50.9 NC_005342.2 + 22148 0.66 0.915905
Target:  5'- gCGuUCACGAuugcuucuccuugucGCCggCGGCAgcCGGCGGCGg -3'
miRNA:   3'- aGC-AGUGCU---------------UGGa-GCUGU--GCUGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 15824 0.66 0.913334
Target:  5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3'
miRNA:   3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5'
26019 5' -50.9 NC_005342.2 + 12130 0.66 0.913334
Target:  5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3'
miRNA:   3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5'
26019 5' -50.9 NC_005342.2 + 36431 0.66 0.912684
Target:  5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3'
miRNA:   3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5'
26019 5' -50.9 NC_005342.2 + 19729 0.66 0.911376
Target:  5'- gCGUCACGGucACCgUGACGCGcccggacgcgcaagGCAACc -3'
miRNA:   3'- aGCAGUGCU--UGGaGCUGUGC--------------UGUUGc -5'
26019 5' -50.9 NC_005342.2 + 12169 0.66 0.909392
Target:  5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3'
miRNA:   3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.