miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 21365 0.66 0.836641
Target:  5'- uCGUGAacgcgcCGACCACGUUcAACGaCACGa -3'
miRNA:   3'- cGCACU------GCUGGUGUAGcUUGCcGUGC- -5'
26020 5' -53.3 NC_005342.2 + 30513 0.66 0.836641
Target:  5'- cGCGUuGCG-CCACAUC---CGGCGCc -3'
miRNA:   3'- -CGCAcUGCuGGUGUAGcuuGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 35843 0.66 0.836641
Target:  5'- ---cGACGGCCuGCG-CGAcCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGG-UGUaGCUuGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 8589 0.66 0.836641
Target:  5'- cGCGaUGcACGaagccgaugcGCgACGUCGAGCucGGCGCGg -3'
miRNA:   3'- -CGC-AC-UGC----------UGgUGUAGCUUG--CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 32080 0.66 0.827608
Target:  5'- cGUG-GGCGGUCGCAUCGucuacgauGGCGGuCACGg -3'
miRNA:   3'- -CGCaCUGCUGGUGUAGC--------UUGCC-GUGC- -5'
26020 5' -53.3 NC_005342.2 + 10211 0.66 0.827608
Target:  5'- uCGgGGCG-CCAggUAUCGAACGGguCGg -3'
miRNA:   3'- cGCaCUGCuGGU--GUAGCUUGCCguGC- -5'
26020 5' -53.3 NC_005342.2 + 9687 0.66 0.827608
Target:  5'- aGCuGUGucguugccgUGAgCGCGUCGGACGGCAaCGc -3'
miRNA:   3'- -CG-CACu--------GCUgGUGUAGCUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 32241 0.66 0.827608
Target:  5'- aGCGUuu--GCCgACGUCGcGCGGCGCGc -3'
miRNA:   3'- -CGCAcugcUGG-UGUAGCuUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 13067 0.66 0.827608
Target:  5'- gGCGUGuGCGcaGCCAguUGUCGAuguACGGCAUc -3'
miRNA:   3'- -CGCAC-UGC--UGGU--GUAGCU---UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 8965 0.66 0.818367
Target:  5'- cGCGgcGGCGACCgACGcgcguUCGcggcuugccaGGCGGCGCGc -3'
miRNA:   3'- -CGCa-CUGCUGG-UGU-----AGC----------UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 6700 0.66 0.818367
Target:  5'- uGCGUGcaACGugCuCAauUCGAGCGcCACGg -3'
miRNA:   3'- -CGCAC--UGCugGuGU--AGCUUGCcGUGC- -5'
26020 5' -53.3 NC_005342.2 + 24309 0.66 0.818367
Target:  5'- -gGUGGCGuuccGCCGCAaggugaggacuUC-AACGGCGCGu -3'
miRNA:   3'- cgCACUGC----UGGUGU-----------AGcUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 32165 0.66 0.818367
Target:  5'- uGCG-GaACGugCGCAggCGu-CGGCGCGa -3'
miRNA:   3'- -CGCaC-UGCugGUGUa-GCuuGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 43647 0.66 0.808926
Target:  5'- -aGUGAaucUGcACgACAUCGuacGCGGCGCGa -3'
miRNA:   3'- cgCACU---GC-UGgUGUAGCu--UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 21284 0.66 0.808926
Target:  5'- --cUGGCGACCugAcgcuaUCGGcagcCGGCGCGa -3'
miRNA:   3'- cgcACUGCUGGugU-----AGCUu---GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 28871 0.66 0.808926
Target:  5'- uCGUGACGGUCACA-CGGGCcGCGCc -3'
miRNA:   3'- cGCACUGCUGGUGUaGCUUGcCGUGc -5'
26020 5' -53.3 NC_005342.2 + 794 0.66 0.808926
Target:  5'- aGCGgcGACGuagcugcggucGCCugcGCGUCGcuCGGCGCGg -3'
miRNA:   3'- -CGCa-CUGC-----------UGG---UGUAGCuuGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 19280 0.66 0.808926
Target:  5'- cGCGUu-CGACCGCGU-GAAcaacgcgugccuCGGCGCGc -3'
miRNA:   3'- -CGCAcuGCUGGUGUAgCUU------------GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 10836 0.66 0.808926
Target:  5'- cGCGcuUGACG-CCGCG-CGGGaagaacgcCGGCGCGa -3'
miRNA:   3'- -CGC--ACUGCuGGUGUaGCUU--------GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 39212 0.66 0.803171
Target:  5'- gGCGUaacggacgacacgccGAuCGGCUAUAUCGAcaucgguuGCGGCGCc -3'
miRNA:   3'- -CGCA---------------CU-GCUGGUGUAGCU--------UGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.