miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 10971 0.66 0.524227
Target:  5'- ----cGACGUcGUcggaaagAGCGCCGCGCCg -3'
miRNA:   3'- gacgaCUGCGaCAag-----UCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 26248 0.66 0.524227
Target:  5'- gCUGCUGGCGCacgu--GCGCauagaGCGCg -3'
miRNA:   3'- -GACGACUGCGacaaguCGCGg----CGCGg -5'
26031 5' -58.2 NC_005342.2 + 44565 0.66 0.524227
Target:  5'- -cGCgaGACGCUGaagaAGauCGCCGCGCg -3'
miRNA:   3'- gaCGa-CUGCGACaag-UC--GCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 20558 0.66 0.523176
Target:  5'- -cGCUGaucgucgGCGCg--UCGG-GUCGCGCCg -3'
miRNA:   3'- gaCGAC-------UGCGacaAGUCgCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 30373 0.66 0.523176
Target:  5'- gCUGCucgagcaccuucaUGAaGCcGUUC-GCGCCGcCGCCg -3'
miRNA:   3'- -GACG-------------ACUgCGaCAAGuCGCGGC-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 4201 0.66 0.513753
Target:  5'- -cGUUGACGCUcgagaacaUCGGCgugaggauGCCGCGCa -3'
miRNA:   3'- gaCGACUGCGAca------AGUCG--------CGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 15779 0.66 0.513753
Target:  5'- aUGCUG-CgGCUcGUcgCGGCGCUgaaggGCGCCg -3'
miRNA:   3'- gACGACuG-CGA-CAa-GUCGCGG-----CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 2869 0.66 0.513753
Target:  5'- -gGCUGAUGUUGgcagagacGUGCUGCGCg -3'
miRNA:   3'- gaCGACUGCGACaagu----CGCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 20192 0.66 0.51271
Target:  5'- aUGCUGACGaacGUgcgccugacgggcUCGGCGgccgaccagauUCGCGCCg -3'
miRNA:   3'- gACGACUGCga-CA-------------AGUCGC-----------GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 9074 0.66 0.503365
Target:  5'- -gGCUuGCGCUGUcaAGCGCaauGuCGCCg -3'
miRNA:   3'- gaCGAcUGCGACAagUCGCGg--C-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 32246 0.66 0.503365
Target:  5'- uUGCcGACGUcGcgCGGCGCgcuCGCGUCg -3'
miRNA:   3'- gACGaCUGCGaCaaGUCGCG---GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 20492 0.66 0.503365
Target:  5'- -gGCUGccgcgcaacCGCUGc-CGGCcgccGCCGCGCCg -3'
miRNA:   3'- gaCGACu--------GCGACaaGUCG----CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 24975 0.66 0.503365
Target:  5'- -cGCgaGCGCgacgUCuGCGuCCGCGCCg -3'
miRNA:   3'- gaCGacUGCGaca-AGuCGC-GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 33667 0.66 0.503365
Target:  5'- -aGC-GGCGaa---CGGCGCCGCGCUg -3'
miRNA:   3'- gaCGaCUGCgacaaGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 45314 0.66 0.503365
Target:  5'- -cGCUGcAgGCUGc-CGGUGUCGcCGCCg -3'
miRNA:   3'- gaCGAC-UgCGACaaGUCGCGGC-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 28377 0.66 0.503365
Target:  5'- -cGUUGAuCGCgcgcgaUUCcccuuGUGCCGCGCCg -3'
miRNA:   3'- gaCGACU-GCGac----AAGu----CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 11890 0.66 0.503365
Target:  5'- -gGCauGCGCag--CGGCGCgCGCGCCa -3'
miRNA:   3'- gaCGacUGCGacaaGUCGCG-GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 35677 0.66 0.502331
Target:  5'- -gGCUGGCGCg---CAGgaCGCCgcaaugcGCGCCg -3'
miRNA:   3'- gaCGACUGCGacaaGUC--GCGG-------CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 27055 0.66 0.49307
Target:  5'- cCUGC--GCGCcaaGUagCAcGCGCUGCGCCg -3'
miRNA:   3'- -GACGacUGCGa--CAa-GU-CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 3961 0.66 0.49307
Target:  5'- aUGUUGGCgGC-GUUUAGCuGCUGCGUg -3'
miRNA:   3'- gACGACUG-CGaCAAGUCG-CGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.