miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 22437 0.66 0.331404
Target:  5'- aGCggCGCGuaCCAGGaCG-CGCuCGGCCGCa -3'
miRNA:   3'- -UGa-GCGC--GGUUCgGCaGCG-GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 36106 0.66 0.331404
Target:  5'- uGCUCGCGCCcgucucGGCCGa--CCGGCagACg -3'
miRNA:   3'- -UGAGCGCGGu-----UCGGCagcGGCCGg-UG- -5'
26033 5' -62.5 NC_005342.2 + 30444 0.66 0.331404
Target:  5'- aGCUCG-GCCGuGgCGUCGCCGaGgUACu -3'
miRNA:   3'- -UGAGCgCGGUuCgGCAGCGGC-CgGUG- -5'
26033 5' -62.5 NC_005342.2 + 17029 0.66 0.331404
Target:  5'- uGCUCGCGguguuCC-AGCCG-CGCCGGa-ACa -3'
miRNA:   3'- -UGAGCGC-----GGuUCGGCaGCGGCCggUG- -5'
26033 5' -62.5 NC_005342.2 + 44536 0.66 0.331404
Target:  5'- cGCUCG-GCgAGGacauggaCGaCGCUGGCCGCg -3'
miRNA:   3'- -UGAGCgCGgUUCg------GCaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 28482 0.66 0.331404
Target:  5'- cGC-CGCGUCGA-CCG-CGCgGGUCGCg -3'
miRNA:   3'- -UGaGCGCGGUUcGGCaGCGgCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2708 0.66 0.324438
Target:  5'- gUUCGUGCCcgucacGGCCGagauugcggccgccgUGCCGGUCGCg -3'
miRNA:   3'- uGAGCGCGGu-----UCGGCa--------------GCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 9074 0.66 0.323671
Target:  5'- gGCUUGCGCuguCAAGCgcaaUGUCGCC-GCCGa -3'
miRNA:   3'- -UGAGCGCG---GUUCG----GCAGCGGcCGGUg -5'
26033 5' -62.5 NC_005342.2 + 33751 0.66 0.323671
Target:  5'- gGCgCGCGCgCAcGCCGUCGCaugGGUCu- -3'
miRNA:   3'- -UGaGCGCG-GUuCGGCAGCGg--CCGGug -5'
26033 5' -62.5 NC_005342.2 + 19177 0.66 0.323671
Target:  5'- ---aGCGCCAGGUCGgcgcgaUCGUgGGCgGCg -3'
miRNA:   3'- ugagCGCGGUUCGGC------AGCGgCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 11263 0.66 0.323671
Target:  5'- uGCcgCGCGCUGuugaacugcGCCGUCGCCuuguugcacuGGUCGCg -3'
miRNA:   3'- -UGa-GCGCGGUu--------CGGCAGCGG----------CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 1979 0.66 0.316073
Target:  5'- cGCcCGCGCgGAugauGCCGaCGUcaCGGCCGCg -3'
miRNA:   3'- -UGaGCGCGgUU----CGGCaGCG--GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 14144 0.66 0.316073
Target:  5'- gGCcCGaUGCCGGGCCGcUCGuCCGGgUGCg -3'
miRNA:   3'- -UGaGC-GCGGUUCGGC-AGC-GGCCgGUG- -5'
26033 5' -62.5 NC_005342.2 + 24926 0.66 0.316073
Target:  5'- -gUCGUGCCcuGcCCGgagaaGCCGcGCCGCa -3'
miRNA:   3'- ugAGCGCGGuuC-GGCag---CGGC-CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 45624 0.66 0.316073
Target:  5'- uGCUCGagguGCUu-GCCGa-GCUGGCCGCg -3'
miRNA:   3'- -UGAGCg---CGGuuCGGCagCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 36157 0.66 0.316073
Target:  5'- aGCUggaGCGC---GCCGUCGCgcugaUGGCCGCg -3'
miRNA:   3'- -UGAg--CGCGguuCGGCAGCG-----GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 4900 0.66 0.316073
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
26033 5' -62.5 NC_005342.2 + 1094 0.66 0.30861
Target:  5'- --gCGCGCgAAGUCGgUGCCGuGCUGCg -3'
miRNA:   3'- ugaGCGCGgUUCGGCaGCGGC-CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 17283 0.66 0.30861
Target:  5'- -gUCGCGCCugacGGCCGccggcguaUCGCCGGaCGu -3'
miRNA:   3'- ugAGCGCGGu---UCGGC--------AGCGGCCgGUg -5'
26033 5' -62.5 NC_005342.2 + 36019 0.66 0.30861
Target:  5'- --aCGCGCCGcccgAGuaGUCGCCGGgCGu -3'
miRNA:   3'- ugaGCGCGGU----UCggCAGCGGCCgGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.