miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 45539 0.65 0.449606
Target:  5'- aCUGCGcgagcagggcgacaGCGGCCgaggucgGGGCGGgccgguUGCGgCCGGg -3'
miRNA:   3'- -GACGC--------------UGCUGG-------CCCGUC------ACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 34510 0.66 0.443949
Target:  5'- -cGUGAuCGACCGcGaGGUGCuCCCGGu -3'
miRNA:   3'- gaCGCU-GCUGGCcCgUCACGuGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 3833 0.66 0.443949
Target:  5'- gCUGCGAgGuCgGcGGC-GUGCggACCCGGc -3'
miRNA:   3'- -GACGCUgCuGgC-CCGuCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 8737 0.66 0.443949
Target:  5'- -gGCGGCGAuCCGuacggacgcgucGGCGGUGUGgCUGGc -3'
miRNA:   3'- gaCGCUGCU-GGC------------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4356 0.66 0.443948
Target:  5'- cCUGCcuCGGgCGGGCGG-GCcGCUCGGu -3'
miRNA:   3'- -GACGcuGCUgGCCCGUCaCG-UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 38382 0.66 0.443948
Target:  5'- gCUGUcucGACGGCC-GGCAG-GgGCUCGGc -3'
miRNA:   3'- -GACG---CUGCUGGcCCGUCaCgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31861 0.66 0.443948
Target:  5'- cCUGCGGCGAacgugggcaCGGGUucgGGUGCGgugagUUCGGg -3'
miRNA:   3'- -GACGCUGCUg--------GCCCG---UCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30501 0.66 0.443948
Target:  5'- gCUGCcggacaGCGACCcgcGGGCgagGGUGCugCCGc -3'
miRNA:   3'- -GACGc-----UGCUGG---CCCG---UCACGugGGCc -5'
26260 5' -60.8 NC_005345.2 + 20260 0.66 0.434608
Target:  5'- aUG-GACGACCucgcGCAGUgGCGCCCGu -3'
miRNA:   3'- gACgCUGCUGGcc--CGUCA-CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 14674 0.66 0.434608
Target:  5'- -gGCGGCGucgccgauGCCGGGCcGgccGUGCCCGu -3'
miRNA:   3'- gaCGCUGC--------UGGCCCGuCa--CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 42691 0.66 0.434608
Target:  5'- cCUGUGGauGCCGGGC---GCgACCCGGc -3'
miRNA:   3'- -GACGCUgcUGGCCCGucaCG-UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10226 0.66 0.434608
Target:  5'- aUGCGggugaaguuccACGcCCcGGCGGU-CACCCGGg -3'
miRNA:   3'- gACGC-----------UGCuGGcCCGUCAcGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10293 0.66 0.425383
Target:  5'- aUGCGGCG--CGGGCuGUGggagcgGCCCGGc -3'
miRNA:   3'- gACGCUGCugGCCCGuCACg-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7549 0.66 0.425383
Target:  5'- gUGCGACGGCCGuGCAcgGCAUCaCGa -3'
miRNA:   3'- gACGCUGCUGGCcCGUcaCGUGG-GCc -5'
26260 5' -60.8 NC_005345.2 + 37032 0.66 0.425383
Target:  5'- -aGCGGC-ACCGGGCgAGccgGgAUCCGGc -3'
miRNA:   3'- gaCGCUGcUGGCCCG-UCa--CgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4918 0.66 0.425383
Target:  5'- gCUGCGGCaGCC--GCAcGUGCGCuCCGGc -3'
miRNA:   3'- -GACGCUGcUGGccCGU-CACGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 25768 0.66 0.425383
Target:  5'- aUGCGGaagUCGGGCAGcucggGCGCCuCGGc -3'
miRNA:   3'- gACGCUgcuGGCCCGUCa----CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 47102 0.66 0.425383
Target:  5'- -cGCGGCccGCCGGGCc--GCGCCgGGc -3'
miRNA:   3'- gaCGCUGc-UGGCCCGucaCGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 20320 0.66 0.416275
Target:  5'- -cGCGuccACGGCgaUGGGCAG-GCGCgCGGu -3'
miRNA:   3'- gaCGC---UGCUG--GCCCGUCaCGUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 14764 0.66 0.416275
Target:  5'- gUGCu-CGACCGGGCucgucgacUGCAacgcCCCGGu -3'
miRNA:   3'- gACGcuGCUGGCCCGuc------ACGU----GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.