miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 16078 0.66 0.478351
Target:  5'- cGUgGCagcUGCCGCAcguaCACGCCGaGCUCg -3'
miRNA:   3'- -UAgCGga-AUGGCGUc---GUGUGGC-CGAG- -5'
26262 5' -58.5 NC_005345.2 + 30829 0.66 0.478351
Target:  5'- cGUCGCggcgugGCUGCAGCagaACACUGGC-Cg -3'
miRNA:   3'- -UAGCGgaa---UGGCGUCG---UGUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 36319 0.66 0.478351
Target:  5'- cUCGCCggugaUGCGGCGCaggcgaACCGGCg- -3'
miRNA:   3'- uAGCGGaaug-GCGUCGUG------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 28541 0.66 0.478351
Target:  5'- cGUCGCCgagACuUGCgAGCGCccGCCGGCc- -3'
miRNA:   3'- -UAGCGGaa-UG-GCG-UCGUG--UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 33795 0.66 0.468201
Target:  5'- cGUCGCCgccuacuUCGCcGCACACCcGCUa -3'
miRNA:   3'- -UAGCGGaau----GGCGuCGUGUGGcCGAg -5'
26262 5' -58.5 NC_005345.2 + 44607 0.66 0.468201
Target:  5'- cAUCGaggaGCgGCGGCAgCGCCGGCUa -3'
miRNA:   3'- -UAGCggaaUGgCGUCGU-GUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 13278 0.66 0.468201
Target:  5'- -cCGCUgcACCgGCAGCuCGCCGGUg- -3'
miRNA:   3'- uaGCGGaaUGG-CGUCGuGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 44989 0.66 0.468201
Target:  5'- -gCGCC-UGCCGCGuCgACACCcGCUCg -3'
miRNA:   3'- uaGCGGaAUGGCGUcG-UGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 40105 0.66 0.467192
Target:  5'- -gCGCCUgcUCGguGuCACAcgccgacCCGGCUCu -3'
miRNA:   3'- uaGCGGAauGGCguC-GUGU-------GGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 6873 0.66 0.458163
Target:  5'- aGUCGCCgaUGCCGCuGCGCAUgUGGaUCg -3'
miRNA:   3'- -UAGCGGa-AUGGCGuCGUGUG-GCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 26010 0.66 0.458163
Target:  5'- cGUCGUUUccgUACCGgacgcgggAGCGCACCGGCg- -3'
miRNA:   3'- -UAGCGGA---AUGGCg-------UCGUGUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 18305 0.66 0.458163
Target:  5'- uUCGuCCUcGCCGUcgcacuggucGGCGuCACCGGCg- -3'
miRNA:   3'- uAGC-GGAaUGGCG----------UCGU-GUGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 12499 0.66 0.458163
Target:  5'- cUCGCCgaguggUCGCAGUACGCgGGUg- -3'
miRNA:   3'- uAGCGGaau---GGCGUCGUGUGgCCGag -5'
26262 5' -58.5 NC_005345.2 + 32786 0.66 0.458162
Target:  5'- cGUCGCgaUcACCGCGGC--GCCGGC-Cg -3'
miRNA:   3'- -UAGCGgaA-UGGCGUCGugUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 32450 0.66 0.458162
Target:  5'- -gUGCCUgucgGCCGUgaugucGGCGaGCCGGCUg -3'
miRNA:   3'- uaGCGGAa---UGGCG------UCGUgUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 23629 0.66 0.458162
Target:  5'- -cUGCCgcuuaCGCAGC-CGCCGGC-Cg -3'
miRNA:   3'- uaGCGGaaug-GCGUCGuGUGGCCGaG- -5'
26262 5' -58.5 NC_005345.2 + 45659 0.66 0.458162
Target:  5'- cUCGCCUgcgacgACCggGCAGUGCAcCCGGaUCg -3'
miRNA:   3'- uAGCGGAa-----UGG--CGUCGUGU-GGCCgAG- -5'
26262 5' -58.5 NC_005345.2 + 43812 0.66 0.456169
Target:  5'- -gCGCCcacggcaccgcACUGCAGCGCuucGCCGGCgUCa -3'
miRNA:   3'- uaGCGGaa---------UGGCGUCGUG---UGGCCG-AG- -5'
26262 5' -58.5 NC_005345.2 + 48579 0.66 0.448241
Target:  5'- -gCGCCgaugaGCuCGCGGCgggcgaggacccACGCCGGCUg -3'
miRNA:   3'- uaGCGGaa---UG-GCGUCG------------UGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 34730 0.66 0.448241
Target:  5'- uUCGCCguaUACCGCGGggugauccuCGCGgCGGCg- -3'
miRNA:   3'- uAGCGGa--AUGGCGUC---------GUGUgGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.