miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 30503 0.66 0.3742
Target:  5'- -uGCCGgacagcGACCCGCGGGCgaGgGUGCu -3'
miRNA:   3'- gcUGGCa-----CUGGGUGUCCGg-CgCGCGu -5'
26271 3' -62 NC_005345.2 + 39231 0.66 0.3742
Target:  5'- uGACCGUGuggcgggucgGCCCggACGGGaagcgcacguUCGUGCGCGg -3'
miRNA:   3'- gCUGGCAC----------UGGG--UGUCC----------GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 26920 0.66 0.3742
Target:  5'- cCGACCGguacGACgCGCugucGGGuuGCuGCGCGa -3'
miRNA:   3'- -GCUGGCa---CUGgGUG----UCCggCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 8296 0.66 0.373357
Target:  5'- -cGCCGUGcuguuggGCgCCAU-GGCgGCGCGCAg -3'
miRNA:   3'- gcUGGCAC-------UG-GGUGuCCGgCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 31182 0.66 0.365825
Target:  5'- aGGCCGcGGCCCgGCAGGCgGCcgaGCc -3'
miRNA:   3'- gCUGGCaCUGGG-UGUCCGgCGcg-CGu -5'
26271 3' -62 NC_005345.2 + 34590 0.66 0.365825
Target:  5'- aCGGCCG-GGCCCGugccguacCGGGCgaggagccaGCGUGCGg -3'
miRNA:   3'- -GCUGGCaCUGGGU--------GUCCGg--------CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 48624 0.66 0.365825
Target:  5'- uCGuguuCCGcGGCCCACAGGgCG-GCGUc -3'
miRNA:   3'- -GCu---GGCaCUGGGUGUCCgGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 316 0.66 0.364994
Target:  5'- uCGACCcucgcucGUGACCCAuCAcGGuCUGCGUGUc -3'
miRNA:   3'- -GCUGG-------CACUGGGU-GU-CC-GGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 37948 0.66 0.357579
Target:  5'- uGcCCGUG--CCACAGGCCG-GCGUc -3'
miRNA:   3'- gCuGGCACugGGUGUCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 30801 0.66 0.357579
Target:  5'- cCGACUGgucGACCUcgaccCGGGCCGaCGuCGCGg -3'
miRNA:   3'- -GCUGGCa--CUGGGu----GUCCGGC-GC-GCGU- -5'
26271 3' -62 NC_005345.2 + 29871 0.66 0.357579
Target:  5'- cCGGCUGUGgACgCACGcGGCCGC-CGUc -3'
miRNA:   3'- -GCUGGCAC-UGgGUGU-CCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 40754 0.66 0.357579
Target:  5'- uCGACCGgcagcGGCUCGuCGGGCCGgucggccgGCGCGg -3'
miRNA:   3'- -GCUGGCa----CUGGGU-GUCCGGCg-------CGCGU- -5'
26271 3' -62 NC_005345.2 + 17882 0.66 0.357579
Target:  5'- -cGCCGUGGCguagucgccgaUCACGGcGCCGCGCaCAc -3'
miRNA:   3'- gcUGGCACUG-----------GGUGUC-CGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 42440 0.66 0.357579
Target:  5'- -cACCGUG-CCCGCcGGCUGCuCGUg -3'
miRNA:   3'- gcUGGCACuGGGUGuCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 6992 0.66 0.357579
Target:  5'- uGGCCGggcGCCgACAGGCaGCGuCGCc -3'
miRNA:   3'- gCUGGCac-UGGgUGUCCGgCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 5734 0.66 0.357579
Target:  5'- cCGGCCGUG-UUC-CGGGCCGCagccgaggacuGCGCc -3'
miRNA:   3'- -GCUGGCACuGGGuGUCCGGCG-----------CGCGu -5'
26271 3' -62 NC_005345.2 + 1675 0.66 0.356762
Target:  5'- -cGCUGUGcugcaucGCCCACAGGUCGC-CGaCAg -3'
miRNA:   3'- gcUGGCAC-------UGGGUGUCCGGCGcGC-GU- -5'
26271 3' -62 NC_005345.2 + 27291 0.66 0.352695
Target:  5'- aGACC--GACCUGCAGcucgcccgcacgcauGCCGCGCaGCAg -3'
miRNA:   3'- gCUGGcaCUGGGUGUC---------------CGGCGCG-CGU- -5'
26271 3' -62 NC_005345.2 + 2177 0.66 0.349465
Target:  5'- uGACCGUGGCgggugcaaCGCcgauGG-CGCGCGCGa -3'
miRNA:   3'- gCUGGCACUGg-------GUGu---CCgGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.