miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 25357 0.66 0.24104
Target:  5'- cGCCGCCgucCUGGCGUggcaGUGCCgGCUc -3'
miRNA:   3'- aCGGUGGac-GGUCGCGa---CGCGGgCGA- -5'
26272 5' -64.6 NC_005345.2 + 43671 0.66 0.24104
Target:  5'- cUGCCGCC-GCCGGgugGCUGaucaGCCuCGCc -3'
miRNA:   3'- -ACGGUGGaCGGUCg--CGACg---CGG-GCGa -5'
26272 5' -64.6 NC_005345.2 + 13599 0.66 0.24104
Target:  5'- gGCUcgACCcGCCGGCGgUGCccgagcCCCGCg -3'
miRNA:   3'- aCGG--UGGaCGGUCGCgACGc-----GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 42790 0.66 0.24104
Target:  5'- cGCCACCgcgGCCaacccGGCGC--CGCUCGUg -3'
miRNA:   3'- aCGGUGGa--CGG-----UCGCGacGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13261 0.66 0.24104
Target:  5'- aUGCCGCC-GUCGGCgaaccGCUGCaCCgGCa -3'
miRNA:   3'- -ACGGUGGaCGGUCG-----CGACGcGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 41315 0.66 0.24104
Target:  5'- gUGaUCAgCUGCCgAGCGCccUGCGUCuCGCUc -3'
miRNA:   3'- -AC-GGUgGACGG-UCGCG--ACGCGG-GCGA- -5'
26272 5' -64.6 NC_005345.2 + 9050 0.66 0.24104
Target:  5'- gUGaCACCgagcagGCgCGGCGCcauUGCuGCCCGCg -3'
miRNA:   3'- -ACgGUGGa-----CG-GUCGCG---ACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 43380 0.66 0.24104
Target:  5'- gGCaCGCCgagcaCCuGCGcCUGCGCCCGg- -3'
miRNA:   3'- aCG-GUGGac---GGuCGC-GACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 542 0.66 0.235051
Target:  5'- aUGCCcuCCgaacaGCCGGCGUggguccuCGCCCGCc -3'
miRNA:   3'- -ACGGu-GGa----CGGUCGCGac-----GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 29332 0.66 0.235051
Target:  5'- gGCCGCCccgggUGUCAGCGCUcGuCGCCgucgGCg -3'
miRNA:   3'- aCGGUGG-----ACGGUCGCGA-C-GCGGg---CGa -5'
26272 5' -64.6 NC_005345.2 + 10096 0.66 0.235051
Target:  5'- cGCCGCCUGCgUAGCGCccacCGgCCGg- -3'
miRNA:   3'- aCGGUGGACG-GUCGCGac--GCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 1990 0.66 0.235051
Target:  5'- gUGCCGCa-GgCGGCGCUcacaGCGCCCccucGCUc -3'
miRNA:   3'- -ACGGUGgaCgGUCGCGA----CGCGGG----CGA- -5'
26272 5' -64.6 NC_005345.2 + 25507 0.66 0.235051
Target:  5'- gGCUGCUgcgucucgGCCGGCgGCUGCGUaaGCg -3'
miRNA:   3'- aCGGUGGa-------CGGUCG-CGACGCGggCGa -5'
26272 5' -64.6 NC_005345.2 + 12755 0.66 0.23446
Target:  5'- cGCCACCcgGCCgcggcagacguGGCGC-GCGuggaccaCCCGCa -3'
miRNA:   3'- aCGGUGGa-CGG-----------UCGCGaCGC-------GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 40073 0.66 0.231518
Target:  5'- cGUCACCgucgaccgcgggcaGCaauGGCGCcGCGCCUGCUc -3'
miRNA:   3'- aCGGUGGa-------------CGg--UCGCGaCGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 20762 0.66 0.229188
Target:  5'- cUGCCGCCgcGgCGGCGC-GUGCCCu-- -3'
miRNA:   3'- -ACGGUGGa-CgGUCGCGaCGCGGGcga -5'
26272 5' -64.6 NC_005345.2 + 14542 0.66 0.229188
Target:  5'- cGCgCACCcaguugacGCCGGCGCUgaacGCGUCCGaCa -3'
miRNA:   3'- aCG-GUGGa-------CGGUCGCGA----CGCGGGC-Ga -5'
26272 5' -64.6 NC_005345.2 + 14679 0.66 0.229188
Target:  5'- cGUCGCCgaUGCCGGgccgGCcGUGCCCGUg -3'
miRNA:   3'- aCGGUGG--ACGGUCg---CGaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 36368 0.66 0.229188
Target:  5'- cGCCGCgUacGCgGGCGCgcuccGCGgCCGCg -3'
miRNA:   3'- aCGGUGgA--CGgUCGCGa----CGCgGGCGa -5'
26272 5' -64.6 NC_005345.2 + 45504 0.66 0.229188
Target:  5'- gGCCGCUgccGCCGG-GCUGCGgacggcacaCCUGCg -3'
miRNA:   3'- aCGGUGGa--CGGUCgCGACGC---------GGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.