miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 5' -57.6 NC_005345.2 + 47636 0.65 0.591204
Target:  5'- cUGCCCcgcguucccgaacaGCGGAGGaGCGGACagguGACC-Ca -3'
miRNA:   3'- aGCGGG--------------UGUCUCCaUGCCUG----CUGGaG- -5'
26275 5' -57.6 NC_005345.2 + 31343 0.66 0.577165
Target:  5'- aCGCCgGCAGggaugauccggcucgGGGUGauCGGGCGAUCg- -3'
miRNA:   3'- aGCGGgUGUC---------------UCCAU--GCCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 5240 0.66 0.56213
Target:  5'- gUGCCCGCGGuacacgguGGgcgugACGGGCGGCa-- -3'
miRNA:   3'- aGCGGGUGUCu-------CCa----UGCCUGCUGgag -5'
26275 5' -57.6 NC_005345.2 + 9725 0.66 0.56213
Target:  5'- gUCGCC----GGGGUcgaGCGGGuCGGCCUCg -3'
miRNA:   3'- -AGCGGguguCUCCA---UGCCU-GCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 3826 0.66 0.56213
Target:  5'- gUCGUCCGCugcGAGGUcgGCGG-CGugCg- -3'
miRNA:   3'- -AGCGGGUGu--CUCCA--UGCCuGCugGag -5'
26275 5' -57.6 NC_005345.2 + 8731 0.66 0.56213
Target:  5'- gUCGCCgGCGGcgauccGUACGGACG-CgUCg -3'
miRNA:   3'- -AGCGGgUGUCuc----CAUGCCUGCuGgAG- -5'
26275 5' -57.6 NC_005345.2 + 16649 0.66 0.550392
Target:  5'- cCGCCgGCAGAGGgACGGcaccggaGCG-CCgUCa -3'
miRNA:   3'- aGCGGgUGUCUCCaUGCC-------UGCuGG-AG- -5'
26275 5' -57.6 NC_005345.2 + 34229 0.66 0.540845
Target:  5'- uUCGCCCGgGGcGGcACGGccgcgaacGCGGuCCUCg -3'
miRNA:   3'- -AGCGGGUgUCuCCaUGCC--------UGCU-GGAG- -5'
26275 5' -57.6 NC_005345.2 + 11685 0.66 0.540845
Target:  5'- cUCGCCCgcgcuGCAGGcGGaucgACGGcCGACCa- -3'
miRNA:   3'- -AGCGGG-----UGUCU-CCa---UGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 44393 0.66 0.540845
Target:  5'- -gGCCCACcauGAcGGUAUGGGCGguuCUCg -3'
miRNA:   3'- agCGGGUGu--CU-CCAUGCCUGCug-GAG- -5'
26275 5' -57.6 NC_005345.2 + 28302 0.66 0.540845
Target:  5'- gCGCCCGCcaAGGgcgACGGcgacgACGACCa- -3'
miRNA:   3'- aGCGGGUGucUCCa--UGCC-----UGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 37566 0.66 0.540845
Target:  5'- -gGCCCgaggcgggcGCAGGcGGgcugcagGCGGGCGACCg- -3'
miRNA:   3'- agCGGG---------UGUCU-CCa------UGCCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 39860 0.67 0.530302
Target:  5'- aCGCCgGCcgcGAGGUACGccGCGGCCg- -3'
miRNA:   3'- aGCGGgUGu--CUCCAUGCc-UGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 40222 0.67 0.530302
Target:  5'- cCGCCCACGGGGG--CGGcCG-CCg- -3'
miRNA:   3'- aGCGGGUGUCUCCauGCCuGCuGGag -5'
26275 5' -57.6 NC_005345.2 + 2994 0.67 0.530302
Target:  5'- aCGUCgGC---GGUACGGGCGGCCg- -3'
miRNA:   3'- aGCGGgUGucuCCAUGCCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 20372 0.67 0.527154
Target:  5'- aUCGCCC-CGGAcgGGUcgaugguguugaccGCGGGCG-CCUg -3'
miRNA:   3'- -AGCGGGuGUCU--CCA--------------UGCCUGCuGGAg -5'
26275 5' -57.6 NC_005345.2 + 31838 0.67 0.519836
Target:  5'- gCaCCCGCGGcGGGUGCGG-CGcACCUg -3'
miRNA:   3'- aGcGGGUGUC-UCCAUGCCuGC-UGGAg -5'
26275 5' -57.6 NC_005345.2 + 17390 0.67 0.518794
Target:  5'- cCGUCCGCGGuGGUccGCGGguagGCGAacgucacCCUCa -3'
miRNA:   3'- aGCGGGUGUCuCCA--UGCC----UGCU-------GGAG- -5'
26275 5' -57.6 NC_005345.2 + 2751 0.67 0.509452
Target:  5'- -gGCCCGCAuGuGGaGCGcgccacgcgcGGCGGCCUCg -3'
miRNA:   3'- agCGGGUGU-CuCCaUGC----------CUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 26630 0.67 0.503263
Target:  5'- gUGCCCgaggacuacaccgagGCcGAGGUGCGGugGGCg-- -3'
miRNA:   3'- aGCGGG---------------UGuCUCCAUGCCugCUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.