miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 3' -54.9 NC_005345.2 + 45639 0.66 0.726078
Target:  5'- cGCAGUUCGCUCAuGACguccucgccugcgaCGACCgGGCAg -3'
miRNA:   3'- -CGUCGGGCGAGU-UUGa-------------GCUGG-CUGUg -5'
26277 3' -54.9 NC_005345.2 + 19735 0.66 0.721778
Target:  5'- cGCAacGCCCGCgagg---CGACCGAgGCc -3'
miRNA:   3'- -CGU--CGGGCGaguuugaGCUGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 4087 0.66 0.721778
Target:  5'- -gAGCCgaCGgUCGAGCaCGACgGGCACa -3'
miRNA:   3'- cgUCGG--GCgAGUUUGaGCUGgCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 23782 0.66 0.721778
Target:  5'- cGCGGCCCGgagCAugagggagAGCU--GCCGACGCu -3'
miRNA:   3'- -CGUCGGGCga-GU--------UUGAgcUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 8377 0.66 0.721778
Target:  5'- --cGCCCGCgCcGGC-CGACCGGCcCg -3'
miRNA:   3'- cguCGGGCGaGuUUGaGCUGGCUGuG- -5'
26277 3' -54.9 NC_005345.2 + 26385 0.66 0.721778
Target:  5'- cGCAGUUCGggC-AGCUCGACgCGAC-Cg -3'
miRNA:   3'- -CGUCGGGCgaGuUUGAGCUG-GCUGuG- -5'
26277 3' -54.9 NC_005345.2 + 42272 0.66 0.721778
Target:  5'- cCAuUCCGC-CGuccacCUCGACCGGCGCg -3'
miRNA:   3'- cGUcGGGCGaGUuu---GAGCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 25079 0.66 0.721778
Target:  5'- aCGGCCgGC-CGAucgGCUCG-CCGuACGCg -3'
miRNA:   3'- cGUCGGgCGaGUU---UGAGCuGGC-UGUG- -5'
26277 3' -54.9 NC_005345.2 + 9621 0.66 0.721778
Target:  5'- uGCAcGaCCUGCUCGA--UCGGCCGGgucCACu -3'
miRNA:   3'- -CGU-C-GGGCGAGUUugAGCUGGCU---GUG- -5'
26277 3' -54.9 NC_005345.2 + 8274 0.66 0.720701
Target:  5'- aGCAuguGCCCGgUCGAAg-CGGCCGcccuccuGCACg -3'
miRNA:   3'- -CGU---CGGGCgAGUUUgaGCUGGC-------UGUG- -5'
26277 3' -54.9 NC_005345.2 + 40523 0.66 0.710966
Target:  5'- aGCAGUcacgaCUGCUCAccCcCGACCGGgGCg -3'
miRNA:   3'- -CGUCG-----GGCGAGUuuGaGCUGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 41072 0.66 0.710966
Target:  5'- uGCAGCCCgGCcgCcuGCUCGG-CGGCGa -3'
miRNA:   3'- -CGUCGGG-CGa-GuuUGAGCUgGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 37954 0.66 0.710966
Target:  5'- cGguGCCCGagcggaUCGggauccgguGGCUCGACgCGGCGa -3'
miRNA:   3'- -CguCGGGCg-----AGU---------UUGAGCUG-GCUGUg -5'
26277 3' -54.9 NC_005345.2 + 42052 0.66 0.710966
Target:  5'- gGCAGCCCGaguuacCGGcuGCUCGG-CGACAg -3'
miRNA:   3'- -CGUCGGGCga----GUU--UGAGCUgGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 1123 0.66 0.710966
Target:  5'- cGCGGCCCaGUUCGAccGCUucCGGuuGGCGg -3'
miRNA:   3'- -CGUCGGG-CGAGUU--UGA--GCUggCUGUg -5'
26277 3' -54.9 NC_005345.2 + 33517 0.66 0.700075
Target:  5'- aGCAGUCCGggCAGGCggCGAgCCGcgGCAUg -3'
miRNA:   3'- -CGUCGGGCgaGUUUGa-GCU-GGC--UGUG- -5'
26277 3' -54.9 NC_005345.2 + 12995 0.66 0.700075
Target:  5'- cGCAGUUCGCgcu-GC-CGGCCG-CACg -3'
miRNA:   3'- -CGUCGGGCGaguuUGaGCUGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 43419 0.66 0.700075
Target:  5'- uGCGGCCCG---GAACaCGGCCGGCcugGCg -3'
miRNA:   3'- -CGUCGGGCgagUUUGaGCUGGCUG---UG- -5'
26277 3' -54.9 NC_005345.2 + 39834 0.66 0.700075
Target:  5'- uCGGCaUCGCg--GGCUCGGCCGGcCGCa -3'
miRNA:   3'- cGUCG-GGCGaguUUGAGCUGGCU-GUG- -5'
26277 3' -54.9 NC_005345.2 + 23677 0.66 0.689117
Target:  5'- cGCGGCCgG-UCGGGCg-GGCCGAgCGCa -3'
miRNA:   3'- -CGUCGGgCgAGUUUGagCUGGCU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.