Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26279 | 3' | -56.2 | NC_005345.2 | + | 45846 | 0.66 | 0.699375 |
Target: 5'- gCGGCGCgGG-CGaCGAUCGuGggGGCGg -3' miRNA: 3'- -GCUGCGgCUgGC-GCUAGUcCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 28315 | 0.66 | 0.699375 |
Target: 5'- gCGACGgCGA-CGaCGAcCAGGAcGACGa -3' miRNA: 3'- -GCUGCgGCUgGC-GCUaGUCCUuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 42696 | 0.66 | 0.699375 |
Target: 5'- gGAUGCCGGgCGCGAcccggCuGGAuaucGGCGa -3' miRNA: 3'- gCUGCGGCUgGCGCUa----GuCCUu---CUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 18206 | 0.66 | 0.699375 |
Target: 5'- -cGCGCCGaguggggcGCCGCGuUCGGGuacGGGCu -3' miRNA: 3'- gcUGCGGC--------UGGCGCuAGUCCu--UCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 43499 | 0.66 | 0.699375 |
Target: 5'- cCGGgccCGCCGGgCGgugcCGAUCGGGucGGCGa -3' miRNA: 3'- -GCU---GCGGCUgGC----GCUAGUCCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 9066 | 0.66 | 0.68868 |
Target: 5'- gCGGCGCCauugcugcCCGCGGUCGacGGu-GACGg -3' miRNA: 3'- -GCUGCGGcu------GGCGCUAGU--CCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 40530 | 0.66 | 0.68868 |
Target: 5'- aCGACugcucacccCCGACCgggGCGAUCGGGccGACc -3' miRNA: 3'- -GCUGc--------GGCUGG---CGCUAGUCCuuCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 34503 | 0.66 | 0.68868 |
Target: 5'- cCGGUGCCGAggaCGCGGUCgAGGcGGGCc -3' miRNA: 3'- -GCUGCGGCUg--GCGCUAG-UCCuUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 24412 | 0.66 | 0.68868 |
Target: 5'- aGACGCCGAaCGCGuUCAcGccGGGCGa -3' miRNA: 3'- gCUGCGGCUgGCGCuAGU-CcuUCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 6823 | 0.66 | 0.68868 |
Target: 5'- gGACGCC-AUgGCGggCGGGAucGACa -3' miRNA: 3'- gCUGCGGcUGgCGCuaGUCCUu-CUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 17701 | 0.66 | 0.687608 |
Target: 5'- -cGCGCCGGCCucgGCGA-CGGGAcccgugaaccgacAGGCa -3' miRNA: 3'- gcUGCGGCUGG---CGCUaGUCCU-------------UCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 35892 | 0.66 | 0.685461 |
Target: 5'- gCGGuuCGCCGACgGCGGcaucgucggguggcUCGGGAcgcGGCGa -3' miRNA: 3'- -GCU--GCGGCUGgCGCU--------------AGUCCUu--CUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 3730 | 0.66 | 0.677933 |
Target: 5'- gCGACGUCGACgaCGCGGUC--GAAGAa- -3' miRNA: 3'- -GCUGCGGCUG--GCGCUAGucCUUCUgc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 30897 | 0.66 | 0.677933 |
Target: 5'- aCGGCG-CGGCCgGCGAgcagcacCGGGAccaGGGCGa -3' miRNA: 3'- -GCUGCgGCUGG-CGCUa------GUCCU---UCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 15066 | 0.66 | 0.677933 |
Target: 5'- gGGCGCCGGCCugcagcgccugcGUGAUCAGGccuACc -3' miRNA: 3'- gCUGCGGCUGG------------CGCUAGUCCuucUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 41678 | 0.66 | 0.673622 |
Target: 5'- uCGGCGCCGaggucgaucgcuGCCGCGGUCAcGAuccgguccugcucGACGu -3' miRNA: 3'- -GCUGCGGC------------UGGCGCUAGUcCUu------------CUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 193 | 0.66 | 0.671463 |
Target: 5'- aCGcAUGCCGcUCGCGAUucuguggcuguccagCGGGGAGGCu -3' miRNA: 3'- -GC-UGCGGCuGGCGCUA---------------GUCCUUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 15182 | 0.66 | 0.656321 |
Target: 5'- uCGGCGcCCGACUggaauccgcggGUGAUCAGGucGaACGc -3' miRNA: 3'- -GCUGC-GGCUGG-----------CGCUAGUCCuuC-UGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 38198 | 0.66 | 0.656321 |
Target: 5'- gGGCGUagGGCgGCGG-CGGGAacGGACGg -3' miRNA: 3'- gCUGCGg-CUGgCGCUaGUCCU--UCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 32808 | 0.66 | 0.645478 |
Target: 5'- uCGGCGCguuCCGCGAggcacUCGGGAagcAGugGg -3' miRNA: 3'- -GCUGCGgcuGGCGCU-----AGUCCU---UCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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