miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 31324 0.66 0.554266
Target:  5'- cGGcCGGGCGggaaggggcACGCCgGCagggaugauccgGCUcggggugaUCGGGCg -3'
miRNA:   3'- -CCaGCCUGC---------UGCGGgCG------------UGA--------AGCCCG- -5'
26288 3' -59 NC_005345.2 + 28714 0.66 0.554266
Target:  5'- cGUCGGACGGaa-CCGagaCGCUcgUCGGGUu -3'
miRNA:   3'- cCAGCCUGCUgcgGGC---GUGA--AGCCCG- -5'
26288 3' -59 NC_005345.2 + 22671 0.66 0.554266
Target:  5'- cGGUCGGGCaGuCGCUCGUcguggcggugaaGCg--GGGCg -3'
miRNA:   3'- -CCAGCCUG-CuGCGGGCG------------UGaagCCCG- -5'
26288 3' -59 NC_005345.2 + 15325 0.66 0.554266
Target:  5'- aGGUCGGuGCGuCgGCCgGgGCguagCGGGUg -3'
miRNA:   3'- -CCAGCC-UGCuG-CGGgCgUGaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 26632 0.66 0.554266
Target:  5'- uGUCGGGCGcccggccggGCGaCCCGUg--UCGGGg -3'
miRNA:   3'- cCAGCCUGC---------UGC-GGGCGugaAGCCCg -5'
26288 3' -59 NC_005345.2 + 9260 0.66 0.554266
Target:  5'- cGGUgCGGcCGACaaguCCCGCAUgUCGGccGCg -3'
miRNA:   3'- -CCA-GCCuGCUGc---GGGCGUGaAGCC--CG- -5'
26288 3' -59 NC_005345.2 + 42745 0.66 0.554266
Target:  5'- cGGaUCGGAcCGGCaCCCGgCGgUUgcCGGGCu -3'
miRNA:   3'- -CC-AGCCU-GCUGcGGGC-GUgAA--GCCCG- -5'
26288 3' -59 NC_005345.2 + 22974 0.66 0.554266
Target:  5'- uGUC-GAgGACaCCCGCGaacUCGGGCu -3'
miRNA:   3'- cCAGcCUgCUGcGGGCGUga-AGCCCG- -5'
26288 3' -59 NC_005345.2 + 37488 0.66 0.554266
Target:  5'- --gCGGuACGACGuuCCCGC-CgggcgCGGGCu -3'
miRNA:   3'- ccaGCC-UGCUGC--GGGCGuGaa---GCCCG- -5'
26288 3' -59 NC_005345.2 + 21873 0.66 0.553226
Target:  5'- aGGUCGGucucggugauCGAcagcagccgguucCGCCCcuCGCUcCGGGCg -3'
miRNA:   3'- -CCAGCCu---------GCU-------------GCGGGc-GUGAaGCCCG- -5'
26288 3' -59 NC_005345.2 + 2036 0.66 0.54389
Target:  5'- cGUCGaGCGG-GCCCgGCGCggcccggCGGGCc -3'
miRNA:   3'- cCAGCcUGCUgCGGG-CGUGaa-----GCCCG- -5'
26288 3' -59 NC_005345.2 + 46581 0.66 0.54389
Target:  5'- aGGUgGGucAUGuacACGCCuCGCGCUggaUCGGGg -3'
miRNA:   3'- -CCAgCC--UGC---UGCGG-GCGUGA---AGCCCg -5'
26288 3' -59 NC_005345.2 + 18265 0.66 0.54389
Target:  5'- cGGcCGcGcCGuCGCCCGCACc-CGGaGCa -3'
miRNA:   3'- -CCaGC-CuGCuGCGGGCGUGaaGCC-CG- -5'
26288 3' -59 NC_005345.2 + 17941 0.66 0.54389
Target:  5'- cGGUcCGGAacugucCGGCGUCCGCucggccgcCUgcCGGGCc -3'
miRNA:   3'- -CCA-GCCU------GCUGCGGGCGu-------GAa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 17523 0.66 0.54389
Target:  5'- cGGcCGGGCGAggaccguguCGCCaUGCGauccgCGGGCc -3'
miRNA:   3'- -CCaGCCUGCU---------GCGG-GCGUgaa--GCCCG- -5'
26288 3' -59 NC_005345.2 + 15644 0.66 0.542856
Target:  5'- cGGUCGGggccgcaauGCGACcggGCCCGguggugaCACacCGGGCc -3'
miRNA:   3'- -CCAGCC---------UGCUG---CGGGC-------GUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 12416 0.66 0.533579
Target:  5'- aGUCGGccgAUGACGUCgagGCGCgucgcgCGGGCu -3'
miRNA:   3'- cCAGCC---UGCUGCGGg--CGUGaa----GCCCG- -5'
26288 3' -59 NC_005345.2 + 5412 0.66 0.533579
Target:  5'- cGGUCGGcCGAgCGUCuCGCcgaguuCUUCGGcgGCg -3'
miRNA:   3'- -CCAGCCuGCU-GCGG-GCGu-----GAAGCC--CG- -5'
26288 3' -59 NC_005345.2 + 5298 0.66 0.533579
Target:  5'- --cCGGcCGACGCCC-CGuCgacCGGGCa -3'
miRNA:   3'- ccaGCCuGCUGCGGGcGU-Gaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 18767 0.66 0.533579
Target:  5'- aGGUaCGccucGACcuGCGCCCGCcgcggGCUgccgUCGGGCa -3'
miRNA:   3'- -CCA-GC----CUGc-UGCGGGCG-----UGA----AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.