miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 3' -54.6 NC_005345.2 + 35948 0.66 0.717925
Target:  5'- uGUGCuCGcCGCGCGGgcugCcgcUCGGGCCg -3'
miRNA:   3'- -CACGuGUcGCGCGUCaa--Ga--AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 2353 0.66 0.717925
Target:  5'- cGUGCuuGGCgGCGCAGcccggUCgcgaccucgCGGGCCc -3'
miRNA:   3'- -CACGugUCG-CGCGUCa----AGaa-------GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 27003 0.66 0.717925
Target:  5'- -cGcCACAGCGuCGCGGUagcgcgaccacgUCgaCGAGUCu -3'
miRNA:   3'- caC-GUGUCGC-GCGUCA------------AGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 5683 0.66 0.711364
Target:  5'- uGUGCGuCGGUgaGCGCGGUcgUCUugaguccgucgaucuUCGAcGCCa -3'
miRNA:   3'- -CACGU-GUCG--CGCGUCA--AGA---------------AGCU-CGG- -5'
26291 3' -54.6 NC_005345.2 + 40316 0.66 0.706973
Target:  5'- cGUGcCGCAGC-CGCGGcaga-CGAGCCc -3'
miRNA:   3'- -CAC-GUGUCGcGCGUCaagaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 37731 0.66 0.706973
Target:  5'- -gGCGCGGCGCcgGCuGGUcggcgucgUCgaggUCGAGCUg -3'
miRNA:   3'- caCGUGUCGCG--CG-UCA--------AGa---AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 47889 0.66 0.695946
Target:  5'- -gGC-CGGCGUGCuGUgg-UCGuGCCg -3'
miRNA:   3'- caCGuGUCGCGCGuCAagaAGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 34924 0.66 0.684853
Target:  5'- cGUGCGCAGgGCGgCGGcga---GGGCCu -3'
miRNA:   3'- -CACGUGUCgCGC-GUCaagaagCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 33294 0.66 0.681515
Target:  5'- aUGCggGCGGCgacgaucagaaccuGCGCGGUguagC-UCGGGCCg -3'
miRNA:   3'- cACG--UGUCG--------------CGCGUCAa---GaAGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 21845 0.66 0.673709
Target:  5'- cUGCGCGgcauGCGUGCGGg----CGAGCUg -3'
miRNA:   3'- cACGUGU----CGCGCGUCaagaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 6002 0.66 0.673709
Target:  5'- -cGCguuGCGG-GUGCAGUUCUccggccggccgUUGGGCCa -3'
miRNA:   3'- caCG---UGUCgCGCGUCAAGA-----------AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 4721 0.66 0.672592
Target:  5'- -cGCAuuccgauCAGCGCGCucgGGUUCacCGGGCUc -3'
miRNA:   3'- caCGU-------GUCGCGCG---UCAAGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 46395 0.67 0.667002
Target:  5'- -cGCGCguGGCGCGCuccacaugCGGGCCg -3'
miRNA:   3'- caCGUG--UCGCGCGucaagaa-GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 47943 0.67 0.662523
Target:  5'- -cGCGCGGCGUggcccGCGGgccggaCUgcCGAGCCg -3'
miRNA:   3'- caCGUGUCGCG-----CGUCaa----GAa-GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 46018 0.67 0.662523
Target:  5'- -gGCACGGCuGUGCAGUggcgCcUCGgcgcgaaguauGGCCg -3'
miRNA:   3'- caCGUGUCG-CGCGUCAa---GaAGC-----------UCGG- -5'
26291 3' -54.6 NC_005345.2 + 44656 0.67 0.662523
Target:  5'- cUGCuGCGGUGgGCAcggCUcgUCGAGCCg -3'
miRNA:   3'- cACG-UGUCGCgCGUcaaGA--AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 3140 0.67 0.662523
Target:  5'- cUGCACAGcCGUGCcgacGGcgUCggCGAGCUc -3'
miRNA:   3'- cACGUGUC-GCGCG----UCa-AGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 12456 0.67 0.651308
Target:  5'- -cGCGCAGCuCGCGGggCaggCGAGgCg -3'
miRNA:   3'- caCGUGUCGcGCGUCaaGaa-GCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 22704 0.67 0.640074
Target:  5'- -gGgGCGGCGUGUGGcaugacgUCaucgUCGAGCCg -3'
miRNA:   3'- caCgUGUCGCGCGUCa------AGa---AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 45395 0.67 0.640074
Target:  5'- gGUGUGCcaAGCccacGCGCgAGUUCUUCGA-CCg -3'
miRNA:   3'- -CACGUG--UCG----CGCG-UCAAGAAGCUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.