Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26301 | 5' | -65.7 | NC_005345.2 | + | 38547 | 0.66 | 0.266831 |
Target: 5'- aCCGGCCgcGCCGCUgCUCGuGCCa--- -3' miRNA: 3'- aGGCCGG--CGGCGGaGGGCuCGGcacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 3951 | 0.66 | 0.266831 |
Target: 5'- -gCGGCCGgCaGCCUCUCGGGCgGc-- -3' miRNA: 3'- agGCCGGCgG-CGGAGGGCUCGgCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 16325 | 0.66 | 0.266831 |
Target: 5'- cUCGGCCcaCUGCUUCCCGAGUgccuCGcGGa -3' miRNA: 3'- aGGCCGGc-GGCGGAGGGCUCG----GCaCC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 12028 | 0.66 | 0.266831 |
Target: 5'- cCCGGCUacgugGCC-CCUgCCGAGCUGg-- -3' miRNA: 3'- aGGCCGG-----CGGcGGAgGGCUCGGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 32224 | 0.66 | 0.260551 |
Target: 5'- gCCGGCCGUa-CCUCauGAGCCGcagcGGc -3' miRNA: 3'- aGGCCGGCGgcGGAGggCUCGGCa---CC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 31654 | 0.66 | 0.260551 |
Target: 5'- aCCGGCgGcCCGCaguuccuUCCCGAcGCCGa-- -3' miRNA: 3'- aGGCCGgC-GGCGg------AGGGCU-CGGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 44956 | 0.66 | 0.254392 |
Target: 5'- gCCGcGCCGCCugcacgGCCUgCCGccCCGUGa -3' miRNA: 3'- aGGC-CGGCGG------CGGAgGGCucGGCACc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 15460 | 0.66 | 0.253782 |
Target: 5'- cCCGaGCCGCuuCGCCUgcuucgggucgagCCCGAGCUGc-- -3' miRNA: 3'- aGGC-CGGCG--GCGGA-------------GGGCUCGGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 5797 | 0.66 | 0.248352 |
Target: 5'- cCCGGCCGaCC-CCgaggUCGAGCCGUa- -3' miRNA: 3'- aGGCCGGC-GGcGGag--GGCUCGGCAcc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 9424 | 0.66 | 0.248352 |
Target: 5'- aCCGGCUGUCaaaggugucgugGCCcgagcucgUCCCGGGCgGUGu -3' miRNA: 3'- aGGCCGGCGG------------CGG--------AGGGCUCGgCACc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 2782 | 0.66 | 0.248352 |
Target: 5'- gCUcGCCGCCGCCcuUCgUGAGCCGc-- -3' miRNA: 3'- aGGcCGGCGGCGG--AGgGCUCGGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 47752 | 0.66 | 0.248352 |
Target: 5'- cUCUGGCC-CCGCgUCaCCGGGaCCGa-- -3' miRNA: 3'- -AGGCCGGcGGCGgAG-GGCUC-GGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 38359 | 0.66 | 0.248352 |
Target: 5'- gCCGGuCCGCCuGCCgcagcgcggcugUCUCGAcgGCCGgcagGGg -3' miRNA: 3'- aGGCC-GGCGG-CGG------------AGGGCU--CGGCa---CC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 33040 | 0.66 | 0.242432 |
Target: 5'- gCCGGCCGCUGCUcacauggCgCGAGCucggCGUGu -3' miRNA: 3'- aGGCCGGCGGCGGa------GgGCUCG----GCACc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 15642 | 0.66 | 0.242432 |
Target: 5'- aCCGGUCgggGCCGCaaugcgaCCGGGCCcgGUGGu -3' miRNA: 3'- aGGCCGG---CGGCGgag----GGCUCGG--CACC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 25380 | 0.66 | 0.241846 |
Target: 5'- gCCGgcucgacgcgaucGCCGCCgGCCUCgCCGucgaGGCCGaGGa -3' miRNA: 3'- aGGC-------------CGGCGG-CGGAG-GGC----UCGGCaCC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 27382 | 0.66 | 0.23663 |
Target: 5'- cCCGGCuCGCCcgccagcgagcaGCacaggggccCUCCCGGGCCGg-- -3' miRNA: 3'- aGGCCG-GCGG------------CG---------GAGGGCUCGGCacc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 8384 | 0.66 | 0.23663 |
Target: 5'- gCCGGCCGaCCgGCCcgaCGAGCCGcUGc -3' miRNA: 3'- aGGCCGGC-GG-CGGaggGCUCGGC-ACc -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 13657 | 0.66 | 0.236056 |
Target: 5'- gCCGacgagcaGCgCGCCGCC-CUCGAcGCCGUcGGg -3' miRNA: 3'- aGGC-------CG-GCGGCGGaGGGCU-CGGCA-CC- -5' |
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26301 | 5' | -65.7 | NC_005345.2 | + | 12660 | 0.66 | 0.234912 |
Target: 5'- gUCGGCCGCCGUUggcguaCCCGccgggucgguuguaGGCCGaGGc -3' miRNA: 3'- aGGCCGGCGGCGGa-----GGGC--------------UCGGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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