miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 3' -62.5 NC_005345.2 + 46615 0.66 0.386057
Target:  5'- gGCCGGcgcCGGGuGCCCCGUcGCCGuuGa -3'
miRNA:   3'- gCGGUCa--GCCU-CGGGGCA-UGGCgcCc -5'
26316 3' -62.5 NC_005345.2 + 11360 0.66 0.386057
Target:  5'- cCGCCAa-CGGcagcAGCCCCGgucgcgGCCgccuGCGGGc -3'
miRNA:   3'- -GCGGUcaGCC----UCGGGGCa-----UGG----CGCCC- -5'
26316 3' -62.5 NC_005345.2 + 48368 0.66 0.386057
Target:  5'- gGcCCGGUCGGcaucCCCCGccGCCGgcCGGGg -3'
miRNA:   3'- gC-GGUCAGCCuc--GGGGCa-UGGC--GCCC- -5'
26316 3' -62.5 NC_005345.2 + 39563 0.66 0.386057
Target:  5'- gGCCGGUCccGGCCggUCGUGCguucgcaggugCGCGGGg -3'
miRNA:   3'- gCGGUCAGccUCGG--GGCAUG-----------GCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 37107 0.66 0.386057
Target:  5'- gCGCCGGUCuccagcucggcaGGGGCCaCGUAgC-CGGGc -3'
miRNA:   3'- -GCGGUCAG------------CCUCGGgGCAUgGcGCCC- -5'
26316 3' -62.5 NC_005345.2 + 27548 0.66 0.386057
Target:  5'- gGCCGGau-GAGUCCCGggUGCCGUucGGGg -3'
miRNA:   3'- gCGGUCagcCUCGGGGC--AUGGCG--CCC- -5'
26316 3' -62.5 NC_005345.2 + 35281 0.66 0.377633
Target:  5'- aGCCGG-CGGAGCgagCUGUACuuguccgcgagCGUGGGg -3'
miRNA:   3'- gCGGUCaGCCUCGg--GGCAUG-----------GCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 3684 0.66 0.377633
Target:  5'- uGCCGGgUGGucGCCCaCGUagagaaugcucuGCCGgGGGg -3'
miRNA:   3'- gCGGUCaGCCu-CGGG-GCA------------UGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 31522 0.66 0.377633
Target:  5'- gGUCAGgacggagaacgCGGcgugcaucacAGCCCCuuggGCCGCGGGc -3'
miRNA:   3'- gCGGUCa----------GCC----------UCGGGGca--UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 45398 0.66 0.377633
Target:  5'- cCGuCCAG-CGGAGCCaguCCGacagGCggCGCGGGc -3'
miRNA:   3'- -GC-GGUCaGCCUCGG---GGCa---UG--GCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 3093 0.66 0.377633
Target:  5'- cCGCCuGaucgacccUCGG-GCCCCGgacaUACCGaGGGg -3'
miRNA:   3'- -GCGGuC--------AGCCuCGGGGC----AUGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 18468 0.66 0.369334
Target:  5'- aGCCGGcCGGAucgucgacccauGCCCgGgUACC-CGGGu -3'
miRNA:   3'- gCGGUCaGCCU------------CGGGgC-AUGGcGCCC- -5'
26316 3' -62.5 NC_005345.2 + 1133 0.66 0.369334
Target:  5'- aGCCucccCGGAGCCugggacaccaCCGcGCCGCGaGGg -3'
miRNA:   3'- gCGGuca-GCCUCGG----------GGCaUGGCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 11316 0.66 0.369334
Target:  5'- cCGCaCAGUCaGGGCCCCcggGCCGUuccGGc -3'
miRNA:   3'- -GCG-GUCAGcCUCGGGGca-UGGCG---CCc -5'
26316 3' -62.5 NC_005345.2 + 5285 0.66 0.368511
Target:  5'- cCGCCg--CGGAGUCCCG-GCCGacgccccgucgacCGGGc -3'
miRNA:   3'- -GCGGucaGCCUCGGGGCaUGGC-------------GCCC- -5'
26316 3' -62.5 NC_005345.2 + 41121 0.66 0.36116
Target:  5'- aCGCCcgcGGUaCGGGGCUCCG-ACUgGCGGc -3'
miRNA:   3'- -GCGG---UCA-GCCUCGGGGCaUGG-CGCCc -5'
26316 3' -62.5 NC_005345.2 + 5276 0.66 0.36116
Target:  5'- gGCgGGcUCGGGGgUCgGgUACUGCGGGg -3'
miRNA:   3'- gCGgUC-AGCCUCgGGgC-AUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 46074 0.66 0.36116
Target:  5'- aGgCGGcCGGGGCCgCCGggGCCuGCGcGGa -3'
miRNA:   3'- gCgGUCaGCCUCGG-GGCa-UGG-CGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 24958 0.66 0.357926
Target:  5'- aGCCcguAGUCGGucgacagcgaaccGCCCCGcGCCauuucgaggaGCGGGa -3'
miRNA:   3'- gCGG---UCAGCCu------------CGGGGCaUGG----------CGCCC- -5'
26316 3' -62.5 NC_005345.2 + 34176 0.66 0.357926
Target:  5'- gGCC---CGGGGCCCCGaccgacugaucacGCCGCGGc -3'
miRNA:   3'- gCGGucaGCCUCGGGGCa------------UGGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.