Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26320 | 3' | -56.4 | NC_005345.2 | + | 43548 | 0.66 | 0.626965 |
Target: 5'- nCGAGCCCG---GCGccCCACGGCacgaGCg -3' miRNA: 3'- -GCUCGGGCguaUGCuaGGUGUCGg---UG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 32742 | 0.66 | 0.626965 |
Target: 5'- uGGGCCCGCuugcucacaGCGGUgUACgAGCCGa -3' miRNA: 3'- gCUCGGGCGua-------UGCUAgGUG-UCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 12760 | 0.66 | 0.626965 |
Target: 5'- gGGGUCC-CAcACG--CCGCGGCCGCg -3' miRNA: 3'- gCUCGGGcGUaUGCuaGGUGUCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 1515 | 0.66 | 0.626965 |
Target: 5'- --uGCCCGCAaaACGAUCUugGGUguCg -3' miRNA: 3'- gcuCGGGCGUa-UGCUAGGugUCGguG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 20882 | 0.66 | 0.626965 |
Target: 5'- gCGAGCCCGCAaaGCGcacUCACuGCCcCg -3' miRNA: 3'- -GCUCGGGCGUa-UGCua-GGUGuCGGuG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 31309 | 0.66 | 0.615904 |
Target: 5'- cCGGGCgCUGCugcGCGGUCUggaggGCGGCCGg -3' miRNA: 3'- -GCUCG-GGCGua-UGCUAGG-----UGUCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 25054 | 0.66 | 0.615904 |
Target: 5'- aCGAG-CgGCGUACGcaccgagugCCACGGCCGg -3' miRNA: 3'- -GCUCgGgCGUAUGCua-------GGUGUCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 37176 | 0.66 | 0.615904 |
Target: 5'- gCGAGCCgacccgacuugaCGUgGUGCGGcuggaUCCACAGCCGu -3' miRNA: 3'- -GCUCGG------------GCG-UAUGCU-----AGGUGUCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 33232 | 0.66 | 0.615904 |
Target: 5'- aGAGCCgGCcccccgaacCGAUCaCACGGCCcgGCa -3' miRNA: 3'- gCUCGGgCGuau------GCUAG-GUGUCGG--UG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 11687 | 0.66 | 0.604857 |
Target: 5'- --cGCCCGCGcugcagGCgGAUCgACGGCCGa -3' miRNA: 3'- gcuCGGGCGUa-----UG-CUAGgUGUCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 16137 | 0.66 | 0.604857 |
Target: 5'- cCGAGCCCGaucgucgACGcccccgCCACcccGGCCGCc -3' miRNA: 3'- -GCUCGGGCgua----UGCua----GGUG---UCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 43098 | 0.66 | 0.604857 |
Target: 5'- gGAGCCCGCcguagcGCGGUgagCUGCAGUgGCu -3' miRNA: 3'- gCUCGGGCGua----UGCUA---GGUGUCGgUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 7991 | 0.66 | 0.604857 |
Target: 5'- --cGUCCGCGUugACGGUCUGCacaguggcgAGCCGCc -3' miRNA: 3'- gcuCGGGCGUA--UGCUAGGUG---------UCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 29825 | 0.66 | 0.593834 |
Target: 5'- aGcAGCCCgGCAU-CG--UCGCGGCCACg -3' miRNA: 3'- gC-UCGGG-CGUAuGCuaGGUGUCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 35051 | 0.66 | 0.593834 |
Target: 5'- --cGCCgGUGUucucgGCGAUCUggACGGCCGCg -3' miRNA: 3'- gcuCGGgCGUA-----UGCUAGG--UGUCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 3592 | 0.66 | 0.593834 |
Target: 5'- -cGGCCCGCcc-CGA-CCuCGGCCGCu -3' miRNA: 3'- gcUCGGGCGuauGCUaGGuGUCGGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 15847 | 0.66 | 0.593834 |
Target: 5'- gCGGGCCCGCucGCGGUgggcgaGCAGCUcgGCg -3' miRNA: 3'- -GCUCGGGCGuaUGCUAgg----UGUCGG--UG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 17372 | 0.66 | 0.593834 |
Target: 5'- uCGGGCUCGUacucgGUGCcGUCCGCGGugguCCGCg -3' miRNA: 3'- -GCUCGGGCG-----UAUGcUAGGUGUC----GGUG- -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 39460 | 0.66 | 0.593834 |
Target: 5'- -cGGCCCGCugauCGGcCUGCAGCCGg -3' miRNA: 3'- gcUCGGGCGuau-GCUaGGUGUCGGUg -5' |
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26320 | 3' | -56.4 | NC_005345.2 | + | 48619 | 0.66 | 0.593834 |
Target: 5'- uGAGCUCGUGU----UCCGCGGcCCACa -3' miRNA: 3'- gCUCGGGCGUAugcuAGGUGUC-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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