miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 16136 0.66 0.563754
Target:  5'- cGGCGUCccgGCGGUacaGAucGCuaagacgcacgccguAGGUCUCGCg -3'
miRNA:   3'- -CCGCGG---CGUCA---CUuuCG---------------UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 17489 0.66 0.559452
Target:  5'- cGGCGUCGggaAG-GAAcuGCGGGCCgccggUCGCc -3'
miRNA:   3'- -CCGCGGCg--UCaCUUu-CGUCCGG-----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 45153 0.66 0.559452
Target:  5'- cGCGCUGCGGcucguccGAcCGGGCCUCGa -3'
miRNA:   3'- cCGCGGCGUCacu----UUcGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 3608 0.66 0.556233
Target:  5'- cGGcCGCugucgcccugcucgCGCAGUGcAAGCGGGCgaagagugUCGCg -3'
miRNA:   3'- -CC-GCG--------------GCGUCACuUUCGUCCGg-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 11846 0.66 0.548741
Target:  5'- -cCGCUGCuGUGAGAGCAG-CC-CGg -3'
miRNA:   3'- ccGCGGCGuCACUUUCGUCcGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 8930 0.66 0.548741
Target:  5'- cGGCgGCCGCccccGUG--GGCGGGCUgcgggUGCu -3'
miRNA:   3'- -CCG-CGGCGu---CACuuUCGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 38448 0.66 0.548741
Target:  5'- aGCuGCCGCAG-GAcAGGcCGGGCacagCGCg -3'
miRNA:   3'- cCG-CGGCGUCaCU-UUC-GUCCGga--GCG- -5'
26326 3' -57.8 NC_005345.2 + 43722 0.66 0.548741
Target:  5'- gGGCGCCGCcgaagaacucGGcGAGAcGCucGGCCgacCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCaCUUU-CGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 22617 0.66 0.548741
Target:  5'- uGCGCCuGCGGUGGuu-CcGGCgCUCGUg -3'
miRNA:   3'- cCGCGG-CGUCACUuucGuCCG-GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31141 0.66 0.538095
Target:  5'- cGGCGuCCGaCAGgc--GGUcgAGGCCUCGa -3'
miRNA:   3'- -CCGC-GGC-GUCacuuUCG--UCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 30483 0.66 0.538095
Target:  5'- uGCGUCGCGGUGGugcGCcGGGUCaUgGCg -3'
miRNA:   3'- cCGCGGCGUCACUuu-CG-UCCGG-AgCG- -5'
26326 3' -57.8 NC_005345.2 + 9044 0.66 0.538095
Target:  5'- cGGCGaCCGCcGgcucguGCAGGUC-CGCg -3'
miRNA:   3'- -CCGC-GGCGuCacuuu-CGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 39513 0.66 0.538095
Target:  5'- gGGUGCCcgAGUGGacccggccgaucGAGCAGGUCgUGCa -3'
miRNA:   3'- -CCGCGGcgUCACU------------UUCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 33359 0.66 0.538095
Target:  5'- cGGCGCgagaGgGGUGggGGC-GGUggCGCg -3'
miRNA:   3'- -CCGCGg---CgUCACuuUCGuCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 1159 0.66 0.538095
Target:  5'- cGCGCCGCgAG-GGGAGCGuGCgCggCGCa -3'
miRNA:   3'- cCGCGGCG-UCaCUUUCGUcCG-Ga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 30371 0.66 0.538095
Target:  5'- cGGCaGcCCGCGGcGGgcGCAGGUCgaggCGUa -3'
miRNA:   3'- -CCG-C-GGCGUCaCUuuCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 5158 0.66 0.534914
Target:  5'- cGCGCCGCGGcGGccgacgagucgggcGAGCcgccGGGCUgcaCGCa -3'
miRNA:   3'- cCGCGGCGUCaCU--------------UUCG----UCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 28093 0.66 0.534914
Target:  5'- gGGUGCCGUccGUGAGGcGCAGGUgcaugggggguccuCUCGg -3'
miRNA:   3'- -CCGCGGCGu-CACUUU-CGUCCG--------------GAGCg -5'
26326 3' -57.8 NC_005345.2 + 35211 0.66 0.52752
Target:  5'- gGGCGCUaucugGCuGUGGAAGUcGGCgCUCa- -3'
miRNA:   3'- -CCGCGG-----CGuCACUUUCGuCCG-GAGcg -5'
26326 3' -57.8 NC_005345.2 + 18452 0.66 0.52752
Target:  5'- uGCGCCcGUGGUGGAc-CGGGUCcCGCg -3'
miRNA:   3'- cCGCGG-CGUCACUUucGUCCGGaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.