miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 3' -63.4 NC_005345.2 + 26375 0.66 0.337403
Target:  5'- gCGGAUCCcu-CCCGAGGugaCCGAguGCCCGa -3'
miRNA:   3'- -GCUUGGGcucGGGCUCC---GGCU--CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 31446 0.66 0.337403
Target:  5'- aCGGGuCCCGucgCCGAGGCCG-GCgCGg -3'
miRNA:   3'- -GCUU-GGGCucgGGCUCCGGCuCGgGC- -5'
26361 3' -63.4 NC_005345.2 + 6144 0.66 0.337403
Target:  5'- gCGGACCCGgucgcaccGGCUcauCGAGGUCcccuccGGCCCGg -3'
miRNA:   3'- -GCUUGGGC--------UCGG---GCUCCGGc-----UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 32079 0.66 0.337403
Target:  5'- uCGGGCUCG-GCCUcGGGCuCGGGUUCGa -3'
miRNA:   3'- -GCUUGGGCuCGGGcUCCG-GCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 3449 0.66 0.337403
Target:  5'- gCGGGcCCCGAGCUCGcgcGGGCUGucggacauGCCuCGa -3'
miRNA:   3'- -GCUU-GGGCUCGGGC---UCCGGCu-------CGG-GC- -5'
26361 3' -63.4 NC_005345.2 + 8258 0.66 0.329741
Target:  5'- cCGggUUCGAGCgCGGGGUucaCGAguGCCCu -3'
miRNA:   3'- -GCuuGGGCUCGgGCUCCG---GCU--CGGGc -5'
26361 3' -63.4 NC_005345.2 + 30084 0.66 0.329741
Target:  5'- gCGAGCaCGGcCCCGAgacGGCCGGGUUCGc -3'
miRNA:   3'- -GCUUGgGCUcGGGCU---CCGGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 37971 0.66 0.329741
Target:  5'- gGGAUCCGguGGCUcgacgcggCGAGuGCCGAGCuuGg -3'
miRNA:   3'- gCUUGGGC--UCGG--------GCUC-CGGCUCGggC- -5'
26361 3' -63.4 NC_005345.2 + 6511 0.66 0.329741
Target:  5'- gGAAcCCCGGGCCgGAcGGCaCGGGgCgGg -3'
miRNA:   3'- gCUU-GGGCUCGGgCU-CCG-GCUCgGgC- -5'
26361 3' -63.4 NC_005345.2 + 26974 0.66 0.329741
Target:  5'- aCGAACCCGAuCCC-AGcGCCGGcgcuGCUCGc -3'
miRNA:   3'- -GCUUGGGCUcGGGcUC-CGGCU----CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 32049 0.66 0.329741
Target:  5'- uCGAcCUCGGGUUCGAGuuCGGGCUCGa -3'
miRNA:   3'- -GCUuGGGCUCGGGCUCcgGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 27542 0.66 0.325205
Target:  5'- gCGAucACCCGcggcaucggcucgucGGacCCCGGcGGCCGGGCgCCGg -3'
miRNA:   3'- -GCU--UGGGC---------------UC--GGGCU-CCGGCUCG-GGC- -5'
26361 3' -63.4 NC_005345.2 + 21590 0.66 0.322208
Target:  5'- cCGGccGCCgGGGUCCGAcGaGCCGAuGCCgCGg -3'
miRNA:   3'- -GCU--UGGgCUCGGGCU-C-CGGCU-CGG-GC- -5'
26361 3' -63.4 NC_005345.2 + 12047 0.66 0.322208
Target:  5'- cCGAGCUgGAGaCCGGcGCCGAGUUCa -3'
miRNA:   3'- -GCUUGGgCUCgGGCUcCGGCUCGGGc -5'
26361 3' -63.4 NC_005345.2 + 27130 0.66 0.322208
Target:  5'- gGGACCguccggCGGGCCCGGcauGCCGccgugcggcagcGGCCCGa -3'
miRNA:   3'- gCUUGG------GCUCGGGCUc--CGGC------------UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 39098 0.66 0.314804
Target:  5'- uCGAACCCGAucgcGUCCucGGCgaGcAGCCCGc -3'
miRNA:   3'- -GCUUGGGCU----CGGGcuCCGg-C-UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 20584 0.66 0.314804
Target:  5'- ---uCCCGGGCCCaaauccGGGGCCGGcgggcGCUCGc -3'
miRNA:   3'- gcuuGGGCUCGGG------CUCCGGCU-----CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 43880 0.66 0.30753
Target:  5'- cCGAccCCCGAGCCCGcccuGCC--GCCCGu -3'
miRNA:   3'- -GCUu-GGGCUCGGGCuc--CGGcuCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 17773 0.66 0.30753
Target:  5'- aGGACCC--GCCCGuGaCCGAucGCCCGa -3'
miRNA:   3'- gCUUGGGcuCGGGCuCcGGCU--CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 10632 0.66 0.30753
Target:  5'- aCGGGCCCac-CCCGGGGCuCGccauggucGCCCGg -3'
miRNA:   3'- -GCUUGGGcucGGGCUCCG-GCu-------CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.