miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 5' -53.2 NC_005345.2 + 40597 0.65 0.867853
Target:  5'- cCCCGcgacggacgucaucAGCggCGuGCCCGAacGGUCGAGgCg -3'
miRNA:   3'- -GGGC--------------UUGa-GCuUGGGCU--CCAGCUUgG- -5'
26361 5' -53.2 NC_005345.2 + 40179 0.66 0.862218
Target:  5'- gCCCGucGACgUGAGCgaC-AGGUCGAGCCc -3'
miRNA:   3'- -GGGC--UUGaGCUUGg-GcUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 22560 0.66 0.862218
Target:  5'- -gCGAGCgCGAGCaCCGAu-UCGAGCCc -3'
miRNA:   3'- ggGCUUGaGCUUG-GGCUccAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 37958 0.66 0.862218
Target:  5'- gCCCGAGCggaUCgGGAUCCGGuGGcUCGAcgcggcgaguGCCg -3'
miRNA:   3'- -GGGCUUG---AG-CUUGGGCU-CC-AGCU----------UGG- -5'
26361 5' -53.2 NC_005345.2 + 46573 0.66 0.862218
Target:  5'- gCCGucagcCUCGGcCCCGAGcacGUCGA-CCg -3'
miRNA:   3'- gGGCuu---GAGCUuGGGCUC---CAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 26149 0.66 0.853966
Target:  5'- gCCCGAcCUCGGcgaggaccccgaGCCCGAGuucgCGggUg -3'
miRNA:   3'- -GGGCUuGAGCU------------UGGGCUCca--GCuuGg -5'
26361 5' -53.2 NC_005345.2 + 546 0.66 0.853966
Target:  5'- -aCGAGCUCauccGGCgCGAGGUCGuACg -3'
miRNA:   3'- ggGCUUGAGc---UUGgGCUCCAGCuUGg -5'
26361 5' -53.2 NC_005345.2 + 15872 0.66 0.853966
Target:  5'- gCCCGcaucCUCGAcauggACCCGGGcacCGAGCUg -3'
miRNA:   3'- -GGGCuu--GAGCU-----UGGGCUCca-GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 19157 0.66 0.853966
Target:  5'- aCCCGGACccCGG--CCGAGGacgccgaCGAGCCc -3'
miRNA:   3'- -GGGCUUGa-GCUugGGCUCCa------GCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 19331 0.66 0.853966
Target:  5'- gCCGAuCUgCGGGCCC--GGUUGGACUc -3'
miRNA:   3'- gGGCUuGA-GCUUGGGcuCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 3252 0.66 0.853966
Target:  5'- aCgCGGcGCUCGGugCCGAGGU---ACCc -3'
miRNA:   3'- -GgGCU-UGAGCUugGGCUCCAgcuUGG- -5'
26361 5' -53.2 NC_005345.2 + 31766 0.66 0.853128
Target:  5'- -gCGAGugcguCUCGggUgCGGGGUCGAcgcacucggguucGCCg -3'
miRNA:   3'- ggGCUU-----GAGCuuGgGCUCCAGCU-------------UGG- -5'
26361 5' -53.2 NC_005345.2 + 43497 0.66 0.845483
Target:  5'- gUCCGGGCccgccgggCGGugCCGAucgGGUCGGcgaucACCg -3'
miRNA:   3'- -GGGCUUGa-------GCUugGGCU---CCAGCU-----UGG- -5'
26361 5' -53.2 NC_005345.2 + 33436 0.66 0.845483
Target:  5'- uCCCGAGC----GCCCGGGGauUCGccgagGACCu -3'
miRNA:   3'- -GGGCUUGagcuUGGGCUCC--AGC-----UUGG- -5'
26361 5' -53.2 NC_005345.2 + 19672 0.66 0.845483
Target:  5'- gCCGA---CGAGCUCGAcGaGUUGGACCg -3'
miRNA:   3'- gGGCUugaGCUUGGGCU-C-CAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 4625 0.66 0.845483
Target:  5'- gCCCGGguucGCUCGAuAUCCGGGccGUCGccuGCUg -3'
miRNA:   3'- -GGGCU----UGAGCU-UGGGCUC--CAGCu--UGG- -5'
26361 5' -53.2 NC_005345.2 + 45785 0.66 0.845483
Target:  5'- gCCC-AGCUCGuagaaccacuGCgCGAGGUCGu-CCg -3'
miRNA:   3'- -GGGcUUGAGCu---------UGgGCUCCAGCuuGG- -5'
26361 5' -53.2 NC_005345.2 + 13195 0.66 0.845483
Target:  5'- gCCCGAGCggcAGCCCGcgcGG-CGAGCa -3'
miRNA:   3'- -GGGCUUGagcUUGGGCu--CCaGCUUGg -5'
26361 5' -53.2 NC_005345.2 + 24775 0.66 0.845483
Target:  5'- gCCGAGCUUGG--CCGc-GUUGAACCg -3'
miRNA:   3'- gGGCUUGAGCUugGGCucCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 23432 0.66 0.845483
Target:  5'- gCCCGggUgUCGggUUCGccGUCcGGACCg -3'
miRNA:   3'- -GGGCuuG-AGCuuGGGCucCAG-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.