miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26412 3' -61.8 NC_005345.2 + 36846 0.66 0.40801
Target:  5'- cGC-CGCGCacucGGGGCACuCGAU-CCCg -3'
miRNA:   3'- -CGaGUGCGgca-CCCCGUG-GCUGcGGG- -5'
26412 3' -61.8 NC_005345.2 + 16866 0.66 0.40801
Target:  5'- uGCagGCGCgguacggccgagCGUGGcGGCGgaaGGCGCCCg -3'
miRNA:   3'- -CGagUGCG------------GCACC-CCGUgg-CUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 19083 0.66 0.40801
Target:  5'- --aCGCGaUCGUGcGGGCcguGCCGugGCUg -3'
miRNA:   3'- cgaGUGC-GGCAC-CCCG---UGGCugCGGg -5'
26412 3' -61.8 NC_005345.2 + 24916 0.66 0.40801
Target:  5'- uGUUCACGCUcggcguGUGGGaGCAgCCGcCGCg- -3'
miRNA:   3'- -CGAGUGCGG------CACCC-CGU-GGCuGCGgg -5'
26412 3' -61.8 NC_005345.2 + 48979 0.66 0.40801
Target:  5'- uCUgACGCgUGUGGGGagcaCGCCGGCccGCUCg -3'
miRNA:   3'- cGAgUGCG-GCACCCC----GUGGCUG--CGGG- -5'
26412 3' -61.8 NC_005345.2 + 2969 0.66 0.407124
Target:  5'- cGUUCGCGCCGUacuuguaGGcgauacgucggcGGUACgGGCGgCCg -3'
miRNA:   3'- -CGAGUGCGGCA-------CC------------CCGUGgCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 46020 0.66 0.405354
Target:  5'- cGCUC-CgGUCGgacGGGGCGgccccucgguauguCCGGgGCCCg -3'
miRNA:   3'- -CGAGuG-CGGCa--CCCCGU--------------GGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 1576 0.66 0.399201
Target:  5'- -gUCGcCGCCGUGGGG-GCCGucacgaGCGUUCc -3'
miRNA:   3'- cgAGU-GCGGCACCCCgUGGC------UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 11616 0.66 0.399201
Target:  5'- cGCUgGCGggaGUGGGcggagagcgagcGCACCGcgccgcagcccGCGCCCg -3'
miRNA:   3'- -CGAgUGCgg-CACCC------------CGUGGC-----------UGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 14321 0.66 0.399201
Target:  5'- uGCgagCACGUCGgcgaGGGGCAggcgcaCGGCGUgCg -3'
miRNA:   3'- -CGa--GUGCGGCa---CCCCGUg-----GCUGCGgG- -5'
26412 3' -61.8 NC_005345.2 + 21993 0.66 0.399201
Target:  5'- uGCUCGgGCCGcugccgcacGGcGGCauGCCGG-GCCCg -3'
miRNA:   3'- -CGAGUgCGGCa--------CC-CCG--UGGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 5337 0.66 0.399201
Target:  5'- cGCUgCAgugcggUGCCGUGGGcGCGCU---GCCCg -3'
miRNA:   3'- -CGA-GU------GCGGCACCC-CGUGGcugCGGG- -5'
26412 3' -61.8 NC_005345.2 + 3361 0.66 0.399201
Target:  5'- cCUCGCGCaGUGguucuacgagcuGGGCGgCGAgGUCCg -3'
miRNA:   3'- cGAGUGCGgCAC------------CCCGUgGCUgCGGG- -5'
26412 3' -61.8 NC_005345.2 + 8538 0.66 0.399201
Target:  5'- gGCUCGCGgagagguacaccCCGUGcucgccGGCugCGAuCGUCCa -3'
miRNA:   3'- -CGAGUGC------------GGCACc-----CCGugGCU-GCGGG- -5'
26412 3' -61.8 NC_005345.2 + 16323 0.66 0.393973
Target:  5'- aGCUCACucccgcgcagcgaaaGCuCGUcGGcGGCaucgcgGCCGGCGCCg -3'
miRNA:   3'- -CGAGUG---------------CG-GCA-CC-CCG------UGGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 34079 0.66 0.390514
Target:  5'- -aUCACGCa--GGcGCugcagGCCGGCGCCCg -3'
miRNA:   3'- cgAGUGCGgcaCCcCG-----UGGCUGCGGG- -5'
26412 3' -61.8 NC_005345.2 + 45850 0.66 0.390514
Target:  5'- cGCgggCgACGaUCGUGgGGGCGgggagcCCGACGCCg -3'
miRNA:   3'- -CGa--G-UGC-GGCAC-CCCGU------GGCUGCGGg -5'
26412 3' -61.8 NC_005345.2 + 24424 0.66 0.389652
Target:  5'- cGUUCACGCCGggcGaGGGUucggucgcggagaACuCGGCGgCCg -3'
miRNA:   3'- -CGAGUGCGGCa--C-CCCG-------------UG-GCUGCgGG- -5'
26412 3' -61.8 NC_005345.2 + 10268 0.66 0.385361
Target:  5'- cGUUCACGCCGcgauccccgaggagaUGcGGCGCgGGCugugggagcgGCCCg -3'
miRNA:   3'- -CGAGUGCGGC---------------ACcCCGUGgCUG----------CGGG- -5'
26412 3' -61.8 NC_005345.2 + 20268 0.66 0.381951
Target:  5'- cCUCGCGCaGUGGcGC-CCGuagUGCCCg -3'
miRNA:   3'- cGAGUGCGgCACCcCGuGGCu--GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.