miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 3' -64.9 NC_005345.2 + 10763 0.66 0.281068
Target:  5'- -aGGUAUUGCcucccGGgaguugcugccgcuuGCUCGGCCGuCCGCa -3'
miRNA:   3'- agCCGUAGCG-----CC---------------CGAGCCGGCcGGCG- -5'
26415 3' -64.9 NC_005345.2 + 37923 0.66 0.27907
Target:  5'- gCGGCAgCGCGGGCagucaugcccaugccCGuGCCacaGGCCGg -3'
miRNA:   3'- aGCCGUaGCGCCCGa--------------GC-CGG---CCGGCg -5'
26415 3' -64.9 NC_005345.2 + 585 0.66 0.278406
Target:  5'- aUCGGgGugaUCGUGGGa---GUCGGCCGCc -3'
miRNA:   3'- -AGCCgU---AGCGCCCgagcCGGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 5766 0.66 0.278406
Target:  5'- -gGGCGcaggCGCaGGuGCUCGGCgugccguaccCGGCCGa -3'
miRNA:   3'- agCCGUa---GCG-CC-CGAGCCG----------GCCGGCg -5'
26415 3' -64.9 NC_005345.2 + 35034 0.66 0.278406
Target:  5'- gUGGCAgacgauccugUCGCcGGUguucUCGGCgaucuggaCGGCCGCg -3'
miRNA:   3'- aGCCGU----------AGCGcCCG----AGCCG--------GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 44670 0.66 0.278406
Target:  5'- aCGGC-UCGuCGaGC-CGGacaCGGCCGCc -3'
miRNA:   3'- aGCCGuAGC-GCcCGaGCCg--GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 31940 0.66 0.278406
Target:  5'- cUCGGCGggUGCGGGUgCGGgugCGGgUGCg -3'
miRNA:   3'- -AGCCGUa-GCGCCCGaGCCg--GCCgGCG- -5'
26415 3' -64.9 NC_005345.2 + 18997 0.66 0.277744
Target:  5'- cCGGCGggacgaccUCGaCGGGUggCGcGCCgcccucgGGCCGCu -3'
miRNA:   3'- aGCCGU--------AGC-GCCCGa-GC-CGG-------CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 45469 0.66 0.277082
Target:  5'- aCGGCGgccgggGUGGGCaugUCGGCgaagguggugggGGCCGCg -3'
miRNA:   3'- aGCCGUag----CGCCCG---AGCCGg-----------CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 23945 0.66 0.272489
Target:  5'- cCGGCcgggggugauucacCGCGGGCUgCuGUcgCGGCCGCg -3'
miRNA:   3'- aGCCGua------------GCGCCCGA-GcCG--GCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 6962 0.66 0.271838
Target:  5'- cCGGCGaucgcuUCGCuGcGGCagGGCUuucggGGCCGCu -3'
miRNA:   3'- aGCCGU------AGCG-C-CCGagCCGG-----CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 34999 0.66 0.271838
Target:  5'- cUCGGCGcCGgGGcGCUgCGGC-GGCCa- -3'
miRNA:   3'- -AGCCGUaGCgCC-CGA-GCCGgCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 25372 0.66 0.271838
Target:  5'- gUGGCAgUGCcGGCUCGacgcgaucgccGCCGGCCu- -3'
miRNA:   3'- aGCCGUaGCGcCCGAGC-----------CGGCCGGcg -5'
26415 3' -64.9 NC_005345.2 + 5439 0.66 0.271838
Target:  5'- uUCGGCggCGCccGGG-UCGGCCGuaggggcgguGCCGa -3'
miRNA:   3'- -AGCCGuaGCG--CCCgAGCCGGC----------CGGCg -5'
26415 3' -64.9 NC_005345.2 + 40739 0.66 0.271188
Target:  5'- -gGGCAgcccuaCGUacugGGGCggaccguUCGGCCgccGGCCGCg -3'
miRNA:   3'- agCCGUa-----GCG----CCCG-------AGCCGG---CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 42925 0.66 0.269246
Target:  5'- -gGGCGUCGUGGuGCagguaucgggaggUGGCCagggcGCCGCg -3'
miRNA:   3'- agCCGUAGCGCC-CGa------------GCCGGc----CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 32908 0.66 0.267957
Target:  5'- -gGGCGcUGCGGGC-CGGUCGaucagggguagcgcaGCUGCu -3'
miRNA:   3'- agCCGUaGCGCCCGaGCCGGC---------------CGGCG- -5'
26415 3' -64.9 NC_005345.2 + 20287 0.66 0.265395
Target:  5'- cCGG-AUCGUGccGGCgacgUCGGucuuaCCGGCCGCg -3'
miRNA:   3'- aGCCgUAGCGC--CCG----AGCC-----GGCCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 12478 0.66 0.265395
Target:  5'- -aGGCGcgacgaucUCGCGGaGCUC-GCCgaguGGUCGCa -3'
miRNA:   3'- agCCGU--------AGCGCC-CGAGcCGG----CCGGCG- -5'
26415 3' -64.9 NC_005345.2 + 32949 0.66 0.265395
Target:  5'- gUCGag--CGCGaGGCggacGCCGGCCGCg -3'
miRNA:   3'- -AGCcguaGCGC-CCGagc-CGGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.