miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 8844 0.66 0.542032
Target:  5'- cGUCGAUGaCGAUGcauUCGAgGGacUGGCCCa -3'
miRNA:   3'- -UAGCUGCcGCUGC---AGCUgCU--GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 21154 0.66 0.542032
Target:  5'- cUCGACGcccuacGCGAcgccccgccCGUCGACGGCGcaccGCCg -3'
miRNA:   3'- uAGCUGC------CGCU---------GCAGCUGCUGC----CGGg -5'
26416 3' -59.2 NC_005345.2 + 30967 0.66 0.542032
Target:  5'- cAUUGgaACGGCGcGCGguUCGAgGugauCGGCCCg -3'
miRNA:   3'- -UAGC--UGCCGC-UGC--AGCUgCu---GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 34999 0.66 0.542032
Target:  5'- cUCGGCGccGgGGCG-CuGCGGCGGCCa -3'
miRNA:   3'- uAGCUGC--CgCUGCaGcUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 8736 0.66 0.542032
Target:  5'- cGUCGGUGGCGAgCG-CGACGACuGCa- -3'
miRNA:   3'- -UAGCUGCCGCU-GCaGCUGCUGcCGgg -5'
26416 3' -59.2 NC_005345.2 + 31409 0.66 0.542032
Target:  5'- -gUGAgGGCGaguGCGcaccCGGCGAUGaGCCCg -3'
miRNA:   3'- uaGCUgCCGC---UGCa---GCUGCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 16493 0.66 0.539965
Target:  5'- cUCGACGGCGucgagguugaaGUCGA--ACGGCUUg -3'
miRNA:   3'- uAGCUGCCGCug---------CAGCUgcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 23654 0.66 0.531726
Target:  5'- --aGGCGGaCGGCGcCGACcagggucGCGGCCg -3'
miRNA:   3'- uagCUGCC-GCUGCaGCUGc------UGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 19745 0.66 0.531726
Target:  5'- -gCGA-GGCGACcgaggccgaGGCGGCGGCCg -3'
miRNA:   3'- uaGCUgCCGCUGcag------CUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 19387 0.66 0.531726
Target:  5'- gAUCGGCGGCGugcccacccGCGgggugcuccgUGACGcccucuUGGCCCa -3'
miRNA:   3'- -UAGCUGCCGC---------UGCa---------GCUGCu-----GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 9403 0.66 0.531725
Target:  5'- cGUCGACGGCG-CGUgGcaGCGG-GGUCUc -3'
miRNA:   3'- -UAGCUGCCGCuGCAgC--UGCUgCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 35601 0.66 0.531725
Target:  5'- -cCGugGaUGugGUCGACGgacagcugcccGCGGUCCc -3'
miRNA:   3'- uaGCugCcGCugCAGCUGC-----------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 16888 0.66 0.530699
Target:  5'- -gUGGCGGCGGaaggcgccCGUCGAgGcacugcugccgcuGCGGCUCa -3'
miRNA:   3'- uaGCUGCCGCU--------GCAGCUgC-------------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 30814 0.66 0.521491
Target:  5'- cUCGACccgGGcCGACGUCG-CGGCguGGCUg -3'
miRNA:   3'- uAGCUG---CC-GCUGCAGCuGCUG--CCGGg -5'
26416 3' -59.2 NC_005345.2 + 1751 0.66 0.521491
Target:  5'- --aGGCaGGCGACGuUUGAcCGuCGGCCa -3'
miRNA:   3'- uagCUG-CCGCUGC-AGCU-GCuGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 34373 0.66 0.521491
Target:  5'- -gCGAUGGaccCGUCGuCGGCGGUCUc -3'
miRNA:   3'- uaGCUGCCgcuGCAGCuGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 6486 0.66 0.521491
Target:  5'- -aCGGCGGCGagcccgagGCGUgGACGccgcAgGGCUCg -3'
miRNA:   3'- uaGCUGCCGC--------UGCAgCUGC----UgCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 27138 0.66 0.52149
Target:  5'- -cCGGCGGgcccggcaugcCGcCGUgCGGCaGCGGCCCg -3'
miRNA:   3'- uaGCUGCC-----------GCuGCA-GCUGcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 23290 0.66 0.52149
Target:  5'- gAUCaGCGGCGACGgcCGGCcguuguccuCGGUCCg -3'
miRNA:   3'- -UAGcUGCCGCUGCa-GCUGcu-------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 34921 0.66 0.52149
Target:  5'- --gGGCGuGCGcaggGCGgCGGCGAgGGCCUg -3'
miRNA:   3'- uagCUGC-CGC----UGCaGCUGCUgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.