miRNA display CGI


Results 1 - 20 of 236 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 3043 0.66 0.604431
Target:  5'- cCCCGAca-GGGucgccGCGUGGauguCCGCGCa -3'
miRNA:   3'- -GGGCUuugCCCua---CGCGCU----GGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 26869 0.66 0.604431
Target:  5'- gCCCGAcAGCGGcGGUGCGguCGAUgggugagGCGCUg -3'
miRNA:   3'- -GGGCU-UUGCC-CUACGC--GCUGg------CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 25148 0.66 0.604431
Target:  5'- aUCGAAugGuGGAUGaccgGCGGCCGgaGCa -3'
miRNA:   3'- gGGCUUugC-CCUACg---CGCUGGCg-CGg -5'
26417 5' -58.1 NC_005345.2 + 9755 0.66 0.604431
Target:  5'- uCCCGGGcACGGcGAuUGCGCcGCCGaggcguaGCUg -3'
miRNA:   3'- -GGGCUU-UGCC-CU-ACGCGcUGGCg------CGG- -5'
26417 5' -58.1 NC_005345.2 + 45325 0.66 0.593794
Target:  5'- aUCCGAGcCGGcGAgcugcUGCGCGGCCucgaucUGCCc -3'
miRNA:   3'- -GGGCUUuGCC-CU-----ACGCGCUGGc-----GCGG- -5'
26417 5' -58.1 NC_005345.2 + 47799 0.66 0.593794
Target:  5'- aCCGGcuCGuGGcagGCGCGuuACCGCGaCCc -3'
miRNA:   3'- gGGCUuuGC-CCua-CGCGC--UGGCGC-GG- -5'
26417 5' -58.1 NC_005345.2 + 7102 0.66 0.593794
Target:  5'- gUCGAAACGGcccGCGaCGugUGgCGCCg -3'
miRNA:   3'- gGGCUUUGCCcuaCGC-GCugGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 16668 0.66 0.593794
Target:  5'- aCCGGAGCGccgucaGGggGUGaCGACCGC-CUg -3'
miRNA:   3'- gGGCUUUGC------CCuaCGC-GCUGGCGcGG- -5'
26417 5' -58.1 NC_005345.2 + 30584 0.66 0.593794
Target:  5'- uCCCGAcGCuGGgcGCGCacccGGCgaGCGCCc -3'
miRNA:   3'- -GGGCUuUGcCCuaCGCG----CUGg-CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 38228 0.66 0.593794
Target:  5'- --gGGAACGGGGacGCGCGgACCgGUGCa -3'
miRNA:   3'- gggCUUUGCCCUa-CGCGC-UGG-CGCGg -5'
26417 5' -58.1 NC_005345.2 + 10302 0.66 0.592732
Target:  5'- aCCCG-AGCGGGAaGCGgGcagagcggaucACCGaugucguCGCCg -3'
miRNA:   3'- -GGGCuUUGCCCUaCGCgC-----------UGGC-------GCGG- -5'
26417 5' -58.1 NC_005345.2 + 47647 0.66 0.583187
Target:  5'- uCCCGAAcaGCGGaGGaGCggacagGUGACCcaugGCGCCu -3'
miRNA:   3'- -GGGCUU--UGCC-CUaCG------CGCUGG----CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 40054 0.66 0.583187
Target:  5'- aCCgCGAcguGCGGGcgGUcgccgGCGACgGCgGCCc -3'
miRNA:   3'- -GG-GCUu--UGCCCuaCG-----CGCUGgCG-CGG- -5'
26417 5' -58.1 NC_005345.2 + 12288 0.66 0.583187
Target:  5'- aCCUGGuccgcuCGGGAUcgagugccccgaGUGCG-CgGCGCCg -3'
miRNA:   3'- -GGGCUuu----GCCCUA------------CGCGCuGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 8564 0.66 0.583187
Target:  5'- gUCCGucGCGGGGauUGagccgcucgaCGUGAuCCGUGCCu -3'
miRNA:   3'- -GGGCuuUGCCCU--AC----------GCGCU-GGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 9640 0.66 0.583187
Target:  5'- gCCCGAGACcgacggcgugugGGGcgGgcugacguacCGCGAgCGcCGCCg -3'
miRNA:   3'- -GGGCUUUG------------CCCuaC----------GCGCUgGC-GCGG- -5'
26417 5' -58.1 NC_005345.2 + 41535 0.66 0.583187
Target:  5'- gCCGGGuCGGcGAUGUGCuccgacaccGGCCuCGCCu -3'
miRNA:   3'- gGGCUUuGCC-CUACGCG---------CUGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 19233 0.66 0.583187
Target:  5'- cCCUGcucuuCGaGGUGCucgGCGACCGCGaCCg -3'
miRNA:   3'- -GGGCuuu--GCcCUACG---CGCUGGCGC-GG- -5'
26417 5' -58.1 NC_005345.2 + 2179 0.66 0.576841
Target:  5'- aCCGugGCGGGugcaacgccgauggcGcGCGCGAUCGCGg- -3'
miRNA:   3'- gGGCuuUGCCC---------------UaCGCGCUGGCGCgg -5'
26417 5' -58.1 NC_005345.2 + 31358 0.66 0.572618
Target:  5'- aUCCGGcuCGGGGUGaucggGCGAUCG-GUCa -3'
miRNA:   3'- -GGGCUuuGCCCUACg----CGCUGGCgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.