miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26418 5' -63.4 NC_005345.2 + 37236 0.66 0.312236
Target:  5'- gGCGGCGUGCCguaguaGCGGgcgACGGcGGCg- -3'
miRNA:   3'- gCGUCGUGCGGg-----CGCCa--UGCC-CCGag -5'
26418 5' -63.4 NC_005345.2 + 10604 0.66 0.312236
Target:  5'- gGCGcGUACGCCgagaccuucUGuCGGUAcgggcccacccCGGGGCUCg -3'
miRNA:   3'- gCGU-CGUGCGG---------GC-GCCAU-----------GCCCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 2661 0.66 0.311498
Target:  5'- uCGCAGCG-GCCacgaaGaCGGUcgaugcgGCGGGGCg- -3'
miRNA:   3'- -GCGUCGUgCGGg----C-GCCA-------UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 47989 0.66 0.304924
Target:  5'- cCGC-GCACGCUccccuCGCGGcGCGGuggugucccaGGCUCc -3'
miRNA:   3'- -GCGuCGUGCGG-----GCGCCaUGCC----------CCGAG- -5'
26418 5' -63.4 NC_005345.2 + 30943 0.66 0.304924
Target:  5'- aCGguGCACGgCCGCGac-CGGGuGCa- -3'
miRNA:   3'- -GCguCGUGCgGGCGCcauGCCC-CGag -5'
26418 5' -63.4 NC_005345.2 + 34599 0.66 0.300601
Target:  5'- aCGCGuucaGCGCCggcgucaacugggugCGCGaGUACGGGGCg- -3'
miRNA:   3'- -GCGUcg--UGCGG---------------GCGC-CAUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 47598 0.66 0.297745
Target:  5'- aCGguGCA-GUCUGCuGGUGUGGGGCa- -3'
miRNA:   3'- -GCguCGUgCGGGCG-CCAUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 30367 0.66 0.297745
Target:  5'- cCGaCGGCA-GCCCGCGG--CGGGcGCa- -3'
miRNA:   3'- -GC-GUCGUgCGGGCGCCauGCCC-CGag -5'
26418 5' -63.4 NC_005345.2 + 16359 0.66 0.290697
Target:  5'- uCGCGGCcgGCG-CCGCGGUgaucGCGacgaucGGGUUCg -3'
miRNA:   3'- -GCGUCG--UGCgGGCGCCA----UGC------CCCGAG- -5'
26418 5' -63.4 NC_005345.2 + 36376 0.66 0.290697
Target:  5'- aCGCgGGCGCGCuCCGCGGccGCGGcGUg- -3'
miRNA:   3'- -GCG-UCGUGCG-GGCGCCa-UGCCcCGag -5'
26418 5' -63.4 NC_005345.2 + 31765 0.66 0.290697
Target:  5'- uGCgAGUGCGUCuCG-GGUGCGGGGUc- -3'
miRNA:   3'- gCG-UCGUGCGG-GCgCCAUGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 41564 0.66 0.290697
Target:  5'- uGC-GCGCGCUCGCcGUgcucGCGGGcguGCUCg -3'
miRNA:   3'- gCGuCGUGCGGGCGcCA----UGCCC---CGAG- -5'
26418 5' -63.4 NC_005345.2 + 23597 0.66 0.290697
Target:  5'- uCGCGGCguucggcgcgACGCCgGCGG-ACcGGGCa- -3'
miRNA:   3'- -GCGUCG----------UGCGGgCGCCaUGcCCCGag -5'
26418 5' -63.4 NC_005345.2 + 43463 0.66 0.290697
Target:  5'- gGCGGCGaGUUCGCGGcgcagcGCGGucGGCUCg -3'
miRNA:   3'- gCGUCGUgCGGGCGCCa-----UGCC--CCGAG- -5'
26418 5' -63.4 NC_005345.2 + 16255 0.66 0.283781
Target:  5'- cCGCAGCGCccccaGCCUGCGGgcCGGu-CUCc -3'
miRNA:   3'- -GCGUCGUG-----CGGGCGCCauGCCccGAG- -5'
26418 5' -63.4 NC_005345.2 + 7576 0.66 0.283781
Target:  5'- cCG-AGCACGCCCGCGaGcACGGcGaGCg- -3'
miRNA:   3'- -GCgUCGUGCGGGCGC-CaUGCC-C-CGag -5'
26418 5' -63.4 NC_005345.2 + 16859 0.66 0.283781
Target:  5'- gCGCAGC-UGCaggCGCGGUACGGccgagcguGGCg- -3'
miRNA:   3'- -GCGUCGuGCGg--GCGCCAUGCC--------CCGag -5'
26418 5' -63.4 NC_005345.2 + 9954 0.66 0.283781
Target:  5'- aGCAGCA-GCUCGCGc-GCGGuGaGCUCg -3'
miRNA:   3'- gCGUCGUgCGGGCGCcaUGCC-C-CGAG- -5'
26418 5' -63.4 NC_005345.2 + 46001 0.66 0.277668
Target:  5'- gGUGGCGgGCCCuCGGggucgcuccggucggACGGGGCg- -3'
miRNA:   3'- gCGUCGUgCGGGcGCCa--------------UGCCCCGag -5'
26418 5' -63.4 NC_005345.2 + 10960 0.66 0.276996
Target:  5'- cCGCcGCccuACGCCCGUccGG-ACGGGcaGCUCa -3'
miRNA:   3'- -GCGuCG---UGCGGGCG--CCaUGCCC--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.