miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 5593 0.66 0.482768
Target:  5'- aGGCGGUCggCGAGcUUGUCGGCgacgaGCUCGg -3'
miRNA:   3'- gCCGUCGG--GCUC-AAUGGCCGa----CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 40177 0.66 0.482768
Target:  5'- gCGcGCAGCUgcggauCGAG--GCCGGCgugcaGCUCGg -3'
miRNA:   3'- -GC-CGUCGG------GCUCaaUGGCCGa----CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 45198 0.66 0.482768
Target:  5'- -uGCcGCCCGAGaggcUGCCGGCcGCggCGa -3'
miRNA:   3'- gcCGuCGGGCUCa---AUGGCCGaCGa-GC- -5'
26421 3' -59.5 NC_005345.2 + 23617 0.66 0.472816
Target:  5'- cCGGCGGaCCGGGca--CGGCUGCg-- -3'
miRNA:   3'- -GCCGUCgGGCUCaaugGCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 36042 0.66 0.46297
Target:  5'- gGGCAGUCCGGG--AUCGcGaagaUGCUCGc -3'
miRNA:   3'- gCCGUCGGGCUCaaUGGC-Cg---ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 36885 0.66 0.46297
Target:  5'- uCGGCguacGGUCCGAacgaGCCGGgcCUGCUCGc -3'
miRNA:   3'- -GCCG----UCGGGCUcaa-UGGCC--GACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 32996 0.66 0.461013
Target:  5'- aGGCGGCCgGGGUgGCgggGGCgucgacgaucggGCUCGg -3'
miRNA:   3'- gCCGUCGGgCUCAaUGg--CCGa-----------CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 34247 0.66 0.453232
Target:  5'- -cGCGGCCCGcuUcGCCcGCUGCUCc -3'
miRNA:   3'- gcCGUCGGGCucAaUGGcCGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 8608 0.66 0.453232
Target:  5'- gGGCAGCUCGGcgaucacgaacGUU-CCGGCgGCgUCGc -3'
miRNA:   3'- gCCGUCGGGCU-----------CAAuGGCCGaCG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 24802 0.66 0.443606
Target:  5'- aGGUGGUgcagCCGGGcgACCGGaucgUGCUCGg -3'
miRNA:   3'- gCCGUCG----GGCUCaaUGGCCg---ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 4340 0.66 0.443606
Target:  5'- uCGGCcgAGCCgGGGUccUGCCucgggcgggcgGGCcGCUCGg -3'
miRNA:   3'- -GCCG--UCGGgCUCA--AUGG-----------CCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 43414 0.66 0.443606
Target:  5'- uCGGCugcGGCCCGGaacacgGCCGGCcugGCgUCGa -3'
miRNA:   3'- -GCCG---UCGGGCUcaa---UGGCCGa--CG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 38300 0.66 0.441695
Target:  5'- gCGGCAGUCCGcccaccgcaGCuCGGCgccgGCUCGu -3'
miRNA:   3'- -GCCGUCGGGCucaa-----UG-GCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5662 0.66 0.434096
Target:  5'- cCGGCGGgcccggaCCGAGccgACCGcGCUGCgccgCGa -3'
miRNA:   3'- -GCCGUCg------GGCUCaa-UGGC-CGACGa---GC- -5'
26421 3' -59.5 NC_005345.2 + 31286 0.66 0.434096
Target:  5'- aCGGCGGacCCCGAGgauucccGCCGggcGCUGCUgCGc -3'
miRNA:   3'- -GCCGUC--GGGCUCaa-----UGGC---CGACGA-GC- -5'
26421 3' -59.5 NC_005345.2 + 26157 0.67 0.424706
Target:  5'- uCGGCgaggaccccgAGCCCGAGUUcGCgGGUgucCUCGa -3'
miRNA:   3'- -GCCG----------UCGGGCUCAA-UGgCCGac-GAGC- -5'
26421 3' -59.5 NC_005345.2 + 2548 0.67 0.424706
Target:  5'- gCGGUGGCgacggCGAGUgcCCGGUcgacgUGCUCGg -3'
miRNA:   3'- -GCCGUCGg----GCUCAauGGCCG-----ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 4108 0.67 0.409938
Target:  5'- gGGCAcaccCCCGAGcgguuggcguucgAgCGGCUGCUCGc -3'
miRNA:   3'- gCCGUc---GGGCUCaa-----------UgGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 21740 0.67 0.406296
Target:  5'- gGGaaacCGGCCCGGGaggGCCccuguGCUGCUCGc -3'
miRNA:   3'- gCC----GUCGGGCUCaa-UGGc----CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 6063 0.67 0.39728
Target:  5'- aCGGCGGgcuCCCGAGUgGCUG-CUGCcCGa -3'
miRNA:   3'- -GCCGUC---GGGCUCAaUGGCcGACGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.