miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 17853 0.65 0.365554
Target:  5'- aGCagcGCCCGGCGggaauccucgggguCCGC-CGUGgCGUAg -3'
miRNA:   3'- -CGgu-UGGGCCGC--------------GGCGaGCACgGCAU- -5'
26423 5' -62 NC_005345.2 + 29747 0.66 0.359736
Target:  5'- aGCCGACCgagcuCGGCGCgacgcUGCUCGgcacgaccGCCGa- -3'
miRNA:   3'- -CGGUUGG-----GCCGCG-----GCGAGCa-------CGGCau -5'
26423 5' -62 NC_005345.2 + 11672 0.66 0.359736
Target:  5'- gGCCAACUUcggGGCGCUGCUCagcaggGUCGg- -3'
miRNA:   3'- -CGGUUGGG---CCGCGGCGAGca----CGGCau -5'
26423 5' -62 NC_005345.2 + 19110 0.66 0.35891
Target:  5'- cGUCGGCCCacgcgugGGCGCCgauccGCUCGgcgaccucgGCCGg- -3'
miRNA:   3'- -CGGUUGGG-------CCGCGG-----CGAGCa--------CGGCau -5'
26423 5' -62 NC_005345.2 + 37215 0.66 0.351538
Target:  5'- aGCCGuucGCCCucgcGUGUCgGCggCGUGCCGUAg -3'
miRNA:   3'- -CGGU---UGGGc---CGCGG-CGa-GCACGGCAU- -5'
26423 5' -62 NC_005345.2 + 31311 0.66 0.351538
Target:  5'- cGCCGggGCCCGGCgGCCGggCGggaaggggcacGCCGg- -3'
miRNA:   3'- -CGGU--UGGGCCG-CGGCgaGCa----------CGGCau -5'
26423 5' -62 NC_005345.2 + 6178 0.66 0.343473
Target:  5'- uCCGGCCCGGCGCaguucCGCgCGUuCCGc- -3'
miRNA:   3'- cGGUUGGGCCGCG-----GCGaGCAcGGCau -5'
26423 5' -62 NC_005345.2 + 31183 0.66 0.343473
Target:  5'- gGCCGcgGCCCGGCagGCgGC-CGaGCCGg- -3'
miRNA:   3'- -CGGU--UGGGCCG--CGgCGaGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 23664 0.66 0.343473
Target:  5'- cGCCGACCagGGUcgcgGCCGgUCGggcggGCCGa- -3'
miRNA:   3'- -CGGUUGGg-CCG----CGGCgAGCa----CGGCau -5'
26423 5' -62 NC_005345.2 + 16737 0.66 0.343473
Target:  5'- gGCUcACCCGGUgGCUGCU-GUcGCCGUu -3'
miRNA:   3'- -CGGuUGGGCCG-CGGCGAgCA-CGGCAu -5'
26423 5' -62 NC_005345.2 + 42682 0.66 0.343473
Target:  5'- cGCCGuacaGCUCGGCGgcCCGCUCGaUGUaCGUc -3'
miRNA:   3'- -CGGU----UGGGCCGC--GGCGAGC-ACG-GCAu -5'
26423 5' -62 NC_005345.2 + 18531 0.66 0.335542
Target:  5'- cGCCAuguGCaCCGGUggGCUGCUCGgggcgcucGCCGg- -3'
miRNA:   3'- -CGGU---UG-GGCCG--CGGCGAGCa-------CGGCau -5'
26423 5' -62 NC_005345.2 + 32258 0.66 0.335542
Target:  5'- uGCCucgaCgGGCGCCuuccgccgccacGCUCG-GCCGUAc -3'
miRNA:   3'- -CGGuug-GgCCGCGG------------CGAGCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 15294 0.66 0.335542
Target:  5'- cGCCGaacGCCuCGGCGagGUUCGUcGCCGa- -3'
miRNA:   3'- -CGGU---UGG-GCCGCggCGAGCA-CGGCau -5'
26423 5' -62 NC_005345.2 + 17896 0.66 0.335542
Target:  5'- cGCCGAUCaCGGCGCCGCgcacacgguUCGacuccucggugaUGUCGg- -3'
miRNA:   3'- -CGGUUGG-GCCGCGGCG---------AGC------------ACGGCau -5'
26423 5' -62 NC_005345.2 + 42620 0.66 0.335542
Target:  5'- cGCCccGCCCcGCcCCGCccCGUGCCGUc -3'
miRNA:   3'- -CGGu-UGGGcCGcGGCGa-GCACGGCAu -5'
26423 5' -62 NC_005345.2 + 14397 0.66 0.327745
Target:  5'- uGCCGAUCCGGCugcacGUCGC-CGacgccUGCCGg- -3'
miRNA:   3'- -CGGUUGGGCCG-----CGGCGaGC-----ACGGCau -5'
26423 5' -62 NC_005345.2 + 12206 0.66 0.327745
Target:  5'- uGCCGcugUCCGGcCGCCGCcuccCGaGCCGUGg -3'
miRNA:   3'- -CGGUu--GGGCC-GCGGCGa---GCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 3313 0.66 0.327745
Target:  5'- cGUC-GCCCGcGcCGCCGC-CGUGCaCGUc -3'
miRNA:   3'- -CGGuUGGGC-C-GCGGCGaGCACG-GCAu -5'
26423 5' -62 NC_005345.2 + 30512 0.66 0.327745
Target:  5'- -gCGACCCGcgggcgaggguGCuGCCGCUCugcGUGCCGg- -3'
miRNA:   3'- cgGUUGGGC-----------CG-CGGCGAG---CACGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.