miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 28028 0.66 0.814528
Target:  5'- cGCGCaGGCC---UCGACGUCGUCGa-- -3'
miRNA:   3'- -CGUG-CUGGacuAGCUGUAGCAGCggc -5'
26428 5' -53.9 NC_005345.2 + 5772 0.66 0.814528
Target:  5'- -gGCGGuCCgcaGGUCGGCGUacgCGUCGaCCGg -3'
miRNA:   3'- cgUGCU-GGa--CUAGCUGUA---GCAGC-GGC- -5'
26428 5' -53.9 NC_005345.2 + 7005 0.66 0.814528
Target:  5'- -gAUGGCUgcugcGAUCGACGccggGUCGCCGg -3'
miRNA:   3'- cgUGCUGGa----CUAGCUGUag--CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 19688 0.66 0.814528
Target:  5'- aGUugGACCgGGcCGACGaguaccgccUCGaCGCCGa -3'
miRNA:   3'- -CGugCUGGaCUaGCUGU---------AGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8966 0.66 0.813591
Target:  5'- gGCuCGACCUGucgcuccGUCGACGggCGUgUGCCu -3'
miRNA:   3'- -CGuGCUGGAC-------UAGCUGUa-GCA-GCGGc -5'
26428 5' -53.9 NC_005345.2 + 31808 0.66 0.805067
Target:  5'- cGC-CGACCUcGA-CGACGUCGagGCg- -3'
miRNA:   3'- -CGuGCUGGA-CUaGCUGUAGCagCGgc -5'
26428 5' -53.9 NC_005345.2 + 3035 0.66 0.805067
Target:  5'- cGCuuCGACCc---CGACAggGUCGCCGc -3'
miRNA:   3'- -CGu-GCUGGacuaGCUGUagCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10516 0.66 0.805067
Target:  5'- gGCAgGACggGAUcgccgaggcCGACGUCGagaUCGCCGu -3'
miRNA:   3'- -CGUgCUGgaCUA---------GCUGUAGC---AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 27020 0.66 0.805067
Target:  5'- aGCGCGACCacGUCGACgaGUCugugcugcUCGCCa -3'
miRNA:   3'- -CGUGCUGGacUAGCUG--UAGc-------AGCGGc -5'
26428 5' -53.9 NC_005345.2 + 24545 0.66 0.805067
Target:  5'- aGCACGcACCcgucgggaUGAUCG-CugcUGUCGCCGu -3'
miRNA:   3'- -CGUGC-UGG--------ACUAGCuGua-GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 43532 0.66 0.795424
Target:  5'- uCGCGGagcgGAUCGcCGagcUCGUCGCCGa -3'
miRNA:   3'- cGUGCUgga-CUAGCuGU---AGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 46201 0.66 0.795424
Target:  5'- -aACGACCuuuccgcccgguUGAUCGACGUCcugCGuuGg -3'
miRNA:   3'- cgUGCUGG------------ACUAGCUGUAGca-GCggC- -5'
26428 5' -53.9 NC_005345.2 + 8704 0.66 0.795424
Target:  5'- -gGCGGCCcggcugUGGcCGACucgucCGUCGCCGg -3'
miRNA:   3'- cgUGCUGG------ACUaGCUGua---GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 48762 0.66 0.795424
Target:  5'- uGCACGACCU--UCGccACGUguUCGCCa -3'
miRNA:   3'- -CGUGCUGGAcuAGC--UGUAgcAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 30725 0.66 0.785609
Target:  5'- gGCGagGACCUGcugccgcacgucGUCGAgGUCGagaCGCCGg -3'
miRNA:   3'- -CGUg-CUGGAC------------UAGCUgUAGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 38577 0.66 0.785609
Target:  5'- cGUACucguCCUcGGUCGGCAUCGUggcgagCGCCu -3'
miRNA:   3'- -CGUGcu--GGA-CUAGCUGUAGCA------GCGGc -5'
26428 5' -53.9 NC_005345.2 + 29941 0.66 0.785609
Target:  5'- -gAgGACCgGcUCGACGUCGggGCCGu -3'
miRNA:   3'- cgUgCUGGaCuAGCUGUAGCagCGGC- -5'
26428 5' -53.9 NC_005345.2 + 35553 0.66 0.784619
Target:  5'- gGCACcGCCggcgGGUCGAgccacacgaucuuCGUCG-CGCCGc -3'
miRNA:   3'- -CGUGcUGGa---CUAGCU-------------GUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 26106 0.66 0.779643
Target:  5'- uGCACGACCucggcgggaugcagcUGGUCGAguUCG-C-CCGg -3'
miRNA:   3'- -CGUGCUGG---------------ACUAGCUguAGCaGcGGC- -5'
26428 5' -53.9 NC_005345.2 + 37444 0.66 0.775635
Target:  5'- -gGCGGCCcgcUGGUCGGcCGUCGaucCGCCu -3'
miRNA:   3'- cgUGCUGG---ACUAGCU-GUAGCa--GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.