miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 6994 0.66 0.55132
Target:  5'- gCCGGGCGC--CGACa-GGCAgCgUCGCCa -3'
miRNA:   3'- -GGCUCGUGcaGCUGgcCCGU-G-AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 25583 0.66 0.55132
Target:  5'- gCCGcAGCuCGgacgCGGCCGacaGGuCAcCUCGCCa -3'
miRNA:   3'- -GGC-UCGuGCa---GCUGGC---CC-GU-GAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 2937 0.66 0.55132
Target:  5'- aCGcAGgACGUCGAucaaCCGGGCGgaaaggucgUUCGCg -3'
miRNA:   3'- gGC-UCgUGCAGCU----GGCCCGU---------GAGCGg -5'
26429 3' -59.2 NC_005345.2 + 8680 0.66 0.55132
Target:  5'- gCCGAuCGCcUCccaCGGGUugUCGCCg -3'
miRNA:   3'- -GGCUcGUGcAGcugGCCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 16179 0.66 0.55132
Target:  5'- cUCGcGCAgGUCGGCCucgacuGC-CUCGCCg -3'
miRNA:   3'- -GGCuCGUgCAGCUGGcc----CGuGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 41895 0.66 0.55132
Target:  5'- gUCGAGCAgcugcuCGUCGucGCCuGGUcgUCGCCg -3'
miRNA:   3'- -GGCUCGU------GCAGC--UGGcCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 45481 0.66 0.55132
Target:  5'- gUGGGCAUGUCGGCgaagguggUGGGgGC-CGCg -3'
miRNA:   3'- gGCUCGUGCAGCUG--------GCCCgUGaGCGg -5'
26429 3' -59.2 NC_005345.2 + 23875 0.66 0.545115
Target:  5'- aCCGGGUcuuACGcCGACgGGaguugagcaggugccGCACgagCGCCg -3'
miRNA:   3'- -GGCUCG---UGCaGCUGgCC---------------CGUGa--GCGG- -5'
26429 3' -59.2 NC_005345.2 + 22000 0.66 0.54099
Target:  5'- gCCGcugccGCACGgCGgcauGCCGGGC-C-CGCCg -3'
miRNA:   3'- -GGCu----CGUGCaGC----UGGCCCGuGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 33294 0.66 0.54099
Target:  5'- gCCGAGCugcuCGcccaccgCGAgCGGGCcCgCGCCc -3'
miRNA:   3'- -GGCUCGu---GCa------GCUgGCCCGuGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 16832 0.66 0.54099
Target:  5'- uUCGAGCAgGaccggcUCGuguACCGGGCGCa-GCUg -3'
miRNA:   3'- -GGCUCGUgC------AGC---UGGCCCGUGagCGG- -5'
26429 3' -59.2 NC_005345.2 + 29436 0.66 0.54099
Target:  5'- gCGGGCgucguccucgGCGUCGAggcGGUACUCGUCg -3'
miRNA:   3'- gGCUCG----------UGCAGCUggcCCGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 46060 0.66 0.54099
Target:  5'- cCCGAGgGuCGaucaggCGGCCGGG-GC-CGCCg -3'
miRNA:   3'- -GGCUCgU-GCa-----GCUGGCCCgUGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 2905 0.66 0.54099
Target:  5'- aCGAGCGgauCGgcgGACCGGGCAgCg-GCCc -3'
miRNA:   3'- gGCUCGU---GCag-CUGGCCCGU-GagCGG- -5'
26429 3' -59.2 NC_005345.2 + 41416 0.66 0.53996
Target:  5'- gUCGAGCcgguccugcagcaGCGgcagcUCGuACCGgcGGCACUCGCg -3'
miRNA:   3'- -GGCUCG-------------UGC-----AGC-UGGC--CCGUGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 42000 0.66 0.530725
Target:  5'- cUCGGGCGCGUgGAuaCCGcuCACcuUCGCCg -3'
miRNA:   3'- -GGCUCGUGCAgCU--GGCccGUG--AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 12475 0.66 0.530725
Target:  5'- gCGAgGCGCGaCGAucUCGcGGaGCUCGCCg -3'
miRNA:   3'- gGCU-CGUGCaGCU--GGC-CCgUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 13619 0.66 0.530725
Target:  5'- cCCGAGCcccGCGagGaACCGgacGGCGCggcgugagCGCCg -3'
miRNA:   3'- -GGCUCG---UGCagC-UGGC---CCGUGa-------GCGG- -5'
26429 3' -59.2 NC_005345.2 + 12807 0.66 0.530725
Target:  5'- cCCGAGC-CGcUCGGCCcgccGGU--UCGCCu -3'
miRNA:   3'- -GGCUCGuGC-AGCUGGc---CCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 32726 0.66 0.530725
Target:  5'- gCCGAGUcCcUCGGCgUGGGCccGCUUGCUc -3'
miRNA:   3'- -GGCUCGuGcAGCUG-GCCCG--UGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.