Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 32354 | 0.69 | 0.26756 |
Target: 5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3' miRNA: 3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31912 | 0.71 | 0.212128 |
Target: 5'- cCGAGUGcCUGCGGCguUUCGAGGCCu-GCu -3' miRNA: 3'- -GCUCGU-GAUGCCG--GGGCUCCGGuuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31856 | 0.66 | 0.430809 |
Target: 5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3' miRNA: 3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31278 | 0.7 | 0.254305 |
Target: 5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3' miRNA: 3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31237 | 0.68 | 0.334123 |
Target: 5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3' miRNA: 3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 30828 | 0.72 | 0.171431 |
Target: 5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3' miRNA: 3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 30091 | 0.78 | 0.070001 |
Target: 5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3' miRNA: 3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29869 | 0.66 | 0.437499 |
Target: 5'- gCGcAGCGCgaggcCGGCaagaaauucaccgaCgCCGAGGUCGAGCa -3' miRNA: 3'- -GC-UCGUGau---GCCG--------------G-GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29679 | 0.69 | 0.282072 |
Target: 5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3' miRNA: 3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29076 | 0.68 | 0.326161 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27725 | 0.67 | 0.393766 |
Target: 5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3' miRNA: 3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27500 | 0.74 | 0.137853 |
Target: 5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3' miRNA: 3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27054 | 0.66 | 0.440384 |
Target: 5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3' miRNA: 3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 26701 | 0.68 | 0.342225 |
Target: 5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 23869 | 0.68 | 0.33332 |
Target: 5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3' miRNA: 3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 23728 | 0.7 | 0.223526 |
Target: 5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3' miRNA: 3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 22279 | 0.67 | 0.358852 |
Target: 5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3' miRNA: 3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 22196 | 0.67 | 0.384833 |
Target: 5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3' miRNA: 3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 21316 | 0.67 | 0.358852 |
Target: 5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3' miRNA: 3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 21181 | 0.66 | 0.430809 |
Target: 5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3' miRNA: 3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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