miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26495 5' -61.2 NC_005357.1 + 36804 0.66 0.385724
Target:  5'- -gGCCACC-UCGCCaacaucgacGcCGUGGCUaCCa -3'
miRNA:   3'- ugCGGUGGaAGCGG---------CuGCACCGGcGG- -5'
26495 5' -61.2 NC_005357.1 + 41601 0.66 0.385724
Target:  5'- uGC-CCACCUg-GCCGACGUucGGCaaggGCUg -3'
miRNA:   3'- -UGcGGUGGAagCGGCUGCA--CCGg---CGG- -5'
26495 5' -61.2 NC_005357.1 + 9882 0.66 0.385724
Target:  5'- -aGCgGCa-UCGCCGGCGgcagcauccUGGCCGgCa -3'
miRNA:   3'- ugCGgUGgaAGCGGCUGC---------ACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 34691 0.66 0.385724
Target:  5'- uCGCCaacagcaaGCCggcCGCCGAgCGUGcGCUGCa -3'
miRNA:   3'- uGCGG--------UGGaa-GCGGCU-GCAC-CGGCGg -5'
26495 5' -61.2 NC_005357.1 + 16195 0.66 0.385724
Target:  5'- gACGCCACgcgccaUUCGCCcgaaGACGUGaGCaGCa -3'
miRNA:   3'- -UGCGGUGg-----AAGCGG----CUGCAC-CGgCGg -5'
26495 5' -61.2 NC_005357.1 + 21132 0.66 0.385724
Target:  5'- gACGCUGCCcagcUUgGCCGcCGUGuCCGCg -3'
miRNA:   3'- -UGCGGUGG----AAgCGGCuGCACcGGCGg -5'
26495 5' -61.2 NC_005357.1 + 18573 0.66 0.385724
Target:  5'- -gGCCGCgCUcgCGgUGACGgccUGGCCGUCc -3'
miRNA:   3'- ugCGGUG-GAa-GCgGCUGC---ACCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 32875 0.66 0.380518
Target:  5'- uCGCCACCggCgagcagaucgcacugGCCGAacaG-GGCCGCa -3'
miRNA:   3'- uGCGGUGGaaG---------------CGGCUg--CaCCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 2233 0.66 0.377073
Target:  5'- cGCGCaGCaggCGgCG-CGUGGCCGCg -3'
miRNA:   3'- -UGCGgUGgaaGCgGCuGCACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 17416 0.66 0.377073
Target:  5'- aGCGgCGCCcacgUCGCCcuuGAgcaGUGGCCccGCCa -3'
miRNA:   3'- -UGCgGUGGa---AGCGG---CUg--CACCGG--CGG- -5'
26495 5' -61.2 NC_005357.1 + 8620 0.66 0.377073
Target:  5'- uGCGCUucucgGCCgcugCGgUGGCGaGGUCGCCg -3'
miRNA:   3'- -UGCGG-----UGGaa--GCgGCUGCaCCGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 26245 0.66 0.374503
Target:  5'- cGCGUCGCCgaaggcacgggcaccCGCCGGCcUGGUCGgCu -3'
miRNA:   3'- -UGCGGUGGaa-------------GCGGCUGcACCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 41824 0.66 0.368554
Target:  5'- gGCGCUGCUg--GCCGACccgcaGGCgGCCa -3'
miRNA:   3'- -UGCGGUGGaagCGGCUGca---CCGgCGG- -5'
26495 5' -61.2 NC_005357.1 + 25762 0.66 0.368554
Target:  5'- cGCGCUGCUgggCGgCGGCaacgaUGGCCGCg -3'
miRNA:   3'- -UGCGGUGGaa-GCgGCUGc----ACCGGCGg -5'
26495 5' -61.2 NC_005357.1 + 19224 0.66 0.368554
Target:  5'- -gGCCGaaUUCaCCGACGaGGCCGaCCu -3'
miRNA:   3'- ugCGGUggAAGcGGCUGCaCCGGC-GG- -5'
26495 5' -61.2 NC_005357.1 + 38578 0.66 0.367709
Target:  5'- gGCGCCugguacaaCUUCGCCGAgGUcaugacucaccacGGCaagCGCCu -3'
miRNA:   3'- -UGCGGug------GAAGCGGCUgCA-------------CCG---GCGG- -5'
26495 5' -61.2 NC_005357.1 + 12270 0.66 0.367709
Target:  5'- gGCGCCaACUgcCGCUGAUGUccgacgcggugcaGGCCGgCg -3'
miRNA:   3'- -UGCGG-UGGaaGCGGCUGCA-------------CCGGCgG- -5'
26495 5' -61.2 NC_005357.1 + 33642 0.66 0.366866
Target:  5'- gGCGCgGCCgacccaucgugCGCCG-CGUG-CUGCCc -3'
miRNA:   3'- -UGCGgUGGaa---------GCGGCuGCACcGGCGG- -5'
26495 5' -61.2 NC_005357.1 + 7619 0.66 0.360168
Target:  5'- -gGUCGCgCagCGCCGgacACGUGGCCuugGCCu -3'
miRNA:   3'- ugCGGUG-GaaGCGGC---UGCACCGG---CGG- -5'
26495 5' -61.2 NC_005357.1 + 24953 0.66 0.360168
Target:  5'- uCGCCGCUgUUCGUgcaggcccUGGCGUGGCaccugGCCu -3'
miRNA:   3'- uGCGGUGG-AAGCG--------GCUGCACCGg----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.