Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26496 | 3' | -62.4 | NC_005357.1 | + | 32345 | 0.66 | 0.317094 |
Target: 5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3' miRNA: 3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 25617 | 0.66 | 0.317094 |
Target: 5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3' miRNA: 3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 14307 | 0.66 | 0.317094 |
Target: 5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3' miRNA: 3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 27659 | 0.66 | 0.317094 |
Target: 5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3' miRNA: 3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 16725 | 0.66 | 0.31483 |
Target: 5'- -cCGCCGCGgggcugguaugagcAGCGuuGCCgaaaUCCGCCGGc -3' miRNA: 3'- caGUGGCGC--------------UCGCgcCGG----AGGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33114 | 0.66 | 0.309594 |
Target: 5'- -gCGCCGaCGuGCGCcGCCaggUCGCCGAg -3' miRNA: 3'- caGUGGC-GCuCGCGcCGGa--GGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 8966 | 0.66 | 0.309594 |
Target: 5'- --uGCCGCGAuagccaGCGUGGCCgu-GCCGGa -3' miRNA: 3'- cagUGGCGCU------CGCGCCGGaggUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 28567 | 0.66 | 0.309594 |
Target: 5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3' miRNA: 3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 28883 | 0.66 | 0.308851 |
Target: 5'- cUCGCUGCuGGCGUaguugcuGGCCgUCGCCGAc -3' miRNA: 3'- cAGUGGCGcUCGCG-------CCGGaGGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 2944 | 0.66 | 0.302229 |
Target: 5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3' miRNA: 3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33853 | 0.66 | 0.302229 |
Target: 5'- --gGCCGCacGCGCGGCCUacgaCGCCc- -3' miRNA: 3'- cagUGGCGcuCGCGCCGGAg---GUGGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 23338 | 0.66 | 0.302229 |
Target: 5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3' miRNA: 3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 10343 | 0.66 | 0.302229 |
Target: 5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3' miRNA: 3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33203 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33251 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33299 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33347 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33395 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 33467 | 0.66 | 0.302229 |
Target: 5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3' miRNA: 3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' |
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26496 | 3' | -62.4 | NC_005357.1 | + | 8578 | 0.66 | 0.302229 |
Target: 5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3' miRNA: 3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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