miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26667 3' -59.7 NC_005808.1 + 28266 0.65 0.433514
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26667 3' -59.7 NC_005808.1 + 37597 0.66 0.425927
Target:  5'- aAGCggaCUGCGCCGaCCUGCuguuCGCCaacGUCa -3'
miRNA:   3'- -UCG---GAUGCGGC-GGAUGuu--GCGGc--CGG- -5'
26667 3' -59.7 NC_005808.1 + 1082 0.66 0.425927
Target:  5'- uGGCCUuccagguguucgACGCUGCggugaaccACGGCaCCGGCCa -3'
miRNA:   3'- -UCGGA------------UGCGGCGga------UGUUGcGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 37513 0.66 0.425927
Target:  5'- gGGCCg--GCCGCCUGuucCAAcCGCaaaaccugccgCGGCCu -3'
miRNA:   3'- -UCGGaugCGGCGGAU---GUU-GCG-----------GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 4867 0.66 0.425927
Target:  5'- cGGUCagguCGuuGCCcagcgcgGCGACGgCGGCCu -3'
miRNA:   3'- -UCGGau--GCggCGGa------UGUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14483 0.66 0.425927
Target:  5'- uGCCgcagGCG-CGCCUgGCGACGCCcaGCUu -3'
miRNA:   3'- uCGGa---UGCgGCGGA-UGUUGCGGc-CGG- -5'
26667 3' -59.7 NC_005808.1 + 13134 0.66 0.424984
Target:  5'- aGGCgUGgGUcguucugcaacugCGCCU-CGAUGUCGGCCa -3'
miRNA:   3'- -UCGgAUgCG-------------GCGGAuGUUGCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 23773 0.66 0.420288
Target:  5'- gGGCCgaUGCGCCGCggCUACGAagauggauuccguggUGCCgaucaacuGGCCu -3'
miRNA:   3'- -UCGG--AUGCGGCG--GAUGUU---------------GCGG--------CCGG- -5'
26667 3' -59.7 NC_005808.1 + 18627 0.66 0.416555
Target:  5'- cGCgaGCGCgGCCUccacCGACGUgaucgacuuCGGCCa -3'
miRNA:   3'- uCGgaUGCGgCGGAu---GUUGCG---------GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 620 0.66 0.416554
Target:  5'- cAGCa-GCGCCGUggACAcgGCGuCCGGCg -3'
miRNA:   3'- -UCGgaUGCGGCGgaUGU--UGC-GGCCGg -5'
26667 3' -59.7 NC_005808.1 + 27506 0.66 0.416554
Target:  5'- cGGCCUcgGCCGCCagcuucuCGGCG-CGGUCg -3'
miRNA:   3'- -UCGGAugCGGCGGau-----GUUGCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 8419 0.66 0.416554
Target:  5'- gGGCCgUGCGCuUGUCUACGGCcuugagGCUuuGGCCc -3'
miRNA:   3'- -UCGG-AUGCG-GCGGAUGUUG------CGG--CCGG- -5'
26667 3' -59.7 NC_005808.1 + 22236 0.66 0.414695
Target:  5'- cGGCCcugguugucgGCCGCgaugGCGuauuCGCCGGCCg -3'
miRNA:   3'- -UCGGaug-------CGGCGga--UGUu---GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 39398 0.66 0.410992
Target:  5'- cAGCUUccGCGCCagauagucggcccguGCCUuuGCGAUGCCGGa- -3'
miRNA:   3'- -UCGGA--UGCGG---------------CGGA--UGUUGCGGCCgg -5'
26667 3' -59.7 NC_005808.1 + 416 0.66 0.40731
Target:  5'- gGGCCUgGCGgaCgGCCUgcugcGCGACGCCaccGCCa -3'
miRNA:   3'- -UCGGA-UGC--GgCGGA-----UGUUGCGGc--CGG- -5'
26667 3' -59.7 NC_005808.1 + 15474 0.66 0.40731
Target:  5'- cGCgUGCaucgGUCGUCcgGCAucuuCGCCGGCCc -3'
miRNA:   3'- uCGgAUG----CGGCGGa-UGUu---GCGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 24218 0.66 0.40731
Target:  5'- cAGCCgucgagGCGCUggGCCagGCGcgcaGCCGGCUg -3'
miRNA:   3'- -UCGGa-----UGCGG--CGGa-UGUug--CGGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 29574 0.66 0.40731
Target:  5'- cAGCCUGuCGUCGCCauugACGuggacacgaccgACGCggaacUGGCCg -3'
miRNA:   3'- -UCGGAU-GCGGCGGa---UGU------------UGCG-----GCCGG- -5'
26667 3' -59.7 NC_005808.1 + 32456 0.66 0.407309
Target:  5'- -cCCUACGCCcCCUACugccgagguGGgGgCGGCCg -3'
miRNA:   3'- ucGGAUGCGGcGGAUG---------UUgCgGCCGG- -5'
26667 3' -59.7 NC_005808.1 + 14819 0.66 0.407309
Target:  5'- cGGCg-GCGCUGCCUucgcccagguCGAUGCCguuggcGGCCa -3'
miRNA:   3'- -UCGgaUGCGGCGGAu---------GUUGCGG------CCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.