miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26758 3' -54.2 NC_005808.1 + 33866 0.66 0.723334
Target:  5'- gGUAGcGCcgcGCCCGCCGGgcacaUCUUCGUg -3'
miRNA:   3'- -CGUC-CGcuuUGGGUGGUCa----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 2515 0.66 0.723334
Target:  5'- uUAGGCGggGCUUcgguucguagACCAGgaaUUCGCg -3'
miRNA:   3'- cGUCCGCuuUGGG----------UGGUCaagGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 30404 0.66 0.723334
Target:  5'- gGCAGGC--AGCgCggGCCGGUuucgUUCUCGCa -3'
miRNA:   3'- -CGUCCGcuUUGgG--UGGUCA----AGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 28192 0.66 0.723334
Target:  5'- cGCcuGGCGAcGCCCagcuucgcuacGCCuacGUUCCgcggCGCg -3'
miRNA:   3'- -CGu-CCGCUuUGGG-----------UGGu--CAAGGa---GCG- -5'
26758 3' -54.2 NC_005808.1 + 6387 0.66 0.722246
Target:  5'- uCAGGCGcAGGCCgGCCGGc-CCgguguagUCGCg -3'
miRNA:   3'- cGUCCGC-UUUGGgUGGUCaaGG-------AGCG- -5'
26758 3' -54.2 NC_005808.1 + 26061 0.66 0.721158
Target:  5'- aGCaAGGCGGccuguacGGCuauaucggccagaCCACCGGcaCCUCGCu -3'
miRNA:   3'- -CG-UCCGCU-------UUG-------------GGUGGUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 27592 0.66 0.712415
Target:  5'- aGCAGGCGgcGCCagaugGCguGgUCgUCGCc -3'
miRNA:   3'- -CGUCCGCuuUGGg----UGguCaAGgAGCG- -5'
26758 3' -54.2 NC_005808.1 + 10397 0.66 0.712415
Target:  5'- cCGGGUGAugcAGCgCGCCGauggCCUCGCc -3'
miRNA:   3'- cGUCCGCU---UUGgGUGGUcaa-GGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 24338 0.66 0.705824
Target:  5'- gGCAGaGCGAuGCCCGuguuguuggucggguCgAGggCUUCGCg -3'
miRNA:   3'- -CGUC-CGCUuUGGGU---------------GgUCaaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 654 0.66 0.701414
Target:  5'- uCAGGCGggGgcuuuugguguuUCUGCCgcGGUaCCUCGCu -3'
miRNA:   3'- cGUCCGCuuU------------GGGUGG--UCAaGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 35350 0.66 0.701414
Target:  5'- gGCcGGCGAcaucGGCCCgcGCCAGUggCCgaagUUGCa -3'
miRNA:   3'- -CGuCCGCU----UUGGG--UGGUCAa-GG----AGCG- -5'
26758 3' -54.2 NC_005808.1 + 1761 0.66 0.690343
Target:  5'- aCAGGCG-AugCCAUauuGUUCCUC-Ca -3'
miRNA:   3'- cGUCCGCuUugGGUGgu-CAAGGAGcG- -5'
26758 3' -54.2 NC_005808.1 + 26260 0.66 0.690343
Target:  5'- aCGGGC---ACCCGCCGGccuggUCggCUCGCg -3'
miRNA:   3'- cGUCCGcuuUGGGUGGUCa----AG--GAGCG- -5'
26758 3' -54.2 NC_005808.1 + 5095 0.66 0.679213
Target:  5'- aCAGGCGGccGGCCCAgcguCCGGUgcggCUggCGCc -3'
miRNA:   3'- cGUCCGCU--UUGGGU----GGUCAa---GGa-GCG- -5'
26758 3' -54.2 NC_005808.1 + 1629 0.66 0.679213
Target:  5'- uCGGGCGugucguACCCAUCGGgguaggUCUgCGCg -3'
miRNA:   3'- cGUCCGCuu----UGGGUGGUCa-----AGGaGCG- -5'
26758 3' -54.2 NC_005808.1 + 40747 0.67 0.668036
Target:  5'- aGCAcGGCGAGGaugaaucucUgCAgCGGUUUCUCGCc -3'
miRNA:   3'- -CGU-CCGCUUU---------GgGUgGUCAAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 31099 0.67 0.668036
Target:  5'- cGCAGGCGcuGCCCuuugCGGUg--UCGCa -3'
miRNA:   3'- -CGUCCGCuuUGGGug--GUCAaggAGCG- -5'
26758 3' -54.2 NC_005808.1 + 39709 0.67 0.656824
Target:  5'- cGCGcGGCGucuguGCCCAUCAccUUCUUGCa -3'
miRNA:   3'- -CGU-CCGCuu---UGGGUGGUcaAGGAGCG- -5'
26758 3' -54.2 NC_005808.1 + 2037 0.67 0.656824
Target:  5'- cGCAGGCGAuagAACacggCGCgCAaUUCCUCGg -3'
miRNA:   3'- -CGUCCGCU---UUGg---GUG-GUcAAGGAGCg -5'
26758 3' -54.2 NC_005808.1 + 11362 0.67 0.656824
Target:  5'- cGguGGCGAccuGCUCGCCcGGcaCCUCGg -3'
miRNA:   3'- -CguCCGCUu--UGGGUGG-UCaaGGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.