miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 1223 0.66 0.532842
Target:  5'- ---uCAUGGCCGAUGa-GGCGGUCGa -3'
miRNA:   3'- uuauGUGCCGGUUGUgaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 685 0.66 0.532842
Target:  5'- ---cUACGG-CGGCGCcGGCcgGGCCGCc -3'
miRNA:   3'- uuauGUGCCgGUUGUGaCCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 1763 0.66 0.532841
Target:  5'- --gGC-CGGCCuGCGcCUGGCGcGUCGg -3'
miRNA:   3'- uuaUGuGCCGGuUGU-GACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 7055 0.66 0.532841
Target:  5'- --cGCAUGGCCu---CgGGCGGCaGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGaCCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 26280 0.66 0.529594
Target:  5'- cGUGCGCGacgacgaccggguaGCCuuC-CgGGUGGCCGCg -3'
miRNA:   3'- uUAUGUGC--------------CGGuuGuGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38721 0.66 0.526354
Target:  5'- --aGCugGGCgGcgaggugcgcaaaguGCGCUGGauuGGUCGCa -3'
miRNA:   3'- uuaUGugCCGgU---------------UGUGACCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 41430 0.66 0.522046
Target:  5'- ----gACGGCgAGCGCaaaCGGCCGCu -3'
miRNA:   3'- uuaugUGCCGgUUGUGaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 414 0.66 0.522046
Target:  5'- --aGCACGGCgGugAUcGuCGGCCGUa -3'
miRNA:   3'- uuaUGUGCCGgUugUGaCcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 21575 0.66 0.522046
Target:  5'- cGUGCcgcuCGGCCAcuuCGgUGGCGGUCa- -3'
miRNA:   3'- uUAUGu---GCCGGUu--GUgACCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 34190 0.66 0.522045
Target:  5'- -cUACGCaGCCAGCGCga--GGCCGg -3'
miRNA:   3'- uuAUGUGcCGGUUGUGaccgCCGGCg -5'
26822 3' -57 NC_005809.1 + 23380 0.66 0.522045
Target:  5'- ----aACGGCCAgaacaucaucgACGCcGGCGGCacggGCa -3'
miRNA:   3'- uuaugUGCCGGU-----------UGUGaCCGCCGg---CG- -5'
26822 3' -57 NC_005809.1 + 1866 0.66 0.522045
Target:  5'- -uUGCAgguucagcccgUGGCCGGCGCUGGcCGGgUGg -3'
miRNA:   3'- uuAUGU-----------GCCGGUUGUGACC-GCCgGCg -5'
26822 3' -57 NC_005809.1 + 41892 0.66 0.52097
Target:  5'- --gGCcCGGCCGGCGCcgccguaggcgccUGGUGGCUa- -3'
miRNA:   3'- uuaUGuGCCGGUUGUG-------------ACCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 17026 0.66 0.511335
Target:  5'- --gACAucauCGGCUAcggggGCGCUgccGGCGGCgGCa -3'
miRNA:   3'- uuaUGU----GCCGGU-----UGUGA---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 33722 0.66 0.511335
Target:  5'- --gGCGaccgaGGCCAacGCGCUGGC--CCGCg -3'
miRNA:   3'- uuaUGUg----CCGGU--UGUGACCGccGGCG- -5'
26822 3' -57 NC_005809.1 + 3794 0.66 0.511335
Target:  5'- cGGUACGguCGGgCAGCAUgaccaGGCGGUCGg -3'
miRNA:   3'- -UUAUGU--GCCgGUUGUGa----CCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 25126 0.66 0.511335
Target:  5'- --gGCACcuGGCCucGAUGCUGGCGGggccaCUGCu -3'
miRNA:   3'- uuaUGUG--CCGG--UUGUGACCGCC-----GGCG- -5'
26822 3' -57 NC_005809.1 + 18417 0.66 0.511335
Target:  5'- --cGCGCaGCCGucgagGCGCUGGgccaGGCgCGCa -3'
miRNA:   3'- uuaUGUGcCGGU-----UGUGACCg---CCG-GCG- -5'
26822 3' -57 NC_005809.1 + 724 0.66 0.511335
Target:  5'- ---cCACGGCCAagucgaGCGcCUGGCGGaugaCCGa -3'
miRNA:   3'- uuauGUGCCGGU------UGU-GACCGCC----GGCg -5'
26822 3' -57 NC_005809.1 + 35937 0.66 0.511335
Target:  5'- --gACAcucCGGCCAAgcgcgcgaaGCUGGCGGCgGa -3'
miRNA:   3'- uuaUGU---GCCGGUUg--------UGACCGCCGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.