miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 28356 0.66 0.438425
Target:  5'- uCGgGCaGCGCGCGGAugGUuuCCUugGCg -3'
miRNA:   3'- -GCgCGgUGCGCGCUUugCGugGGG--CG- -5'
26981 5' -60.1 NC_005809.1 + 5423 0.66 0.438425
Target:  5'- aCGCuCCACgGCGCGGAugGCGgCgUGg -3'
miRNA:   3'- -GCGcGGUG-CGCGCUUugCGUgGgGCg -5'
26981 5' -60.1 NC_005809.1 + 32040 0.66 0.438425
Target:  5'- gCGCGUgGCG-GCGGAaaGCGUGgCCgGCg -3'
miRNA:   3'- -GCGCGgUGCgCGCUU--UGCGUgGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 3038 0.66 0.432759
Target:  5'- uGCGauuCACGCGgGcaauccaggagccgaGAAUGCGCCCCa- -3'
miRNA:   3'- gCGCg--GUGCGCgC---------------UUUGCGUGGGGcg -5'
26981 5' -60.1 NC_005809.1 + 12611 0.66 0.429006
Target:  5'- uGCGCaugGCGCc-GACGCGCUCgGCa -3'
miRNA:   3'- gCGCGgugCGCGcuUUGCGUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 2226 0.66 0.429006
Target:  5'- aGCaCCACGCGCagcaggcGGCGCgugGCCgCGCa -3'
miRNA:   3'- gCGcGGUGCGCGcu-----UUGCG---UGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 17893 0.66 0.429006
Target:  5'- --aGCCugGgCGUG-GACGUGgCCCGCg -3'
miRNA:   3'- gcgCGGugC-GCGCuUUGCGUgGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 31413 0.66 0.429006
Target:  5'- aGCGCacgcaACGUGCGcAGGCG-GCCCaGCa -3'
miRNA:   3'- gCGCGg----UGCGCGC-UUUGCgUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 7995 0.66 0.429006
Target:  5'- aGCaCCACgGCGUcGGACGUGCCCUugGCg -3'
miRNA:   3'- gCGcGGUG-CGCGcUUUGCGUGGGG--CG- -5'
26981 5' -60.1 NC_005809.1 + 20579 0.66 0.427137
Target:  5'- gGCGCCGacgaaacccgcacgcUGCGCGAauccGgcuaucggucguuccGCGCACugugCCCGCg -3'
miRNA:   3'- gCGCGGU---------------GCGCGCU----U---------------UGCGUG----GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 32804 0.66 0.423413
Target:  5'- cCGCGUggaACGaucuggacuucgagGCGAAGCGCGCCCaccacgaGCa -3'
miRNA:   3'- -GCGCGg--UGCg-------------CGCUUUGCGUGGGg------CG- -5'
26981 5' -60.1 NC_005809.1 + 39634 0.66 0.422485
Target:  5'- aCGUGCCGCGCGacgcggugugggcCGGcaugggaaugggcaaGACGguUUCCGCg -3'
miRNA:   3'- -GCGCGGUGCGC-------------GCU---------------UUGCguGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 25241 0.66 0.419708
Target:  5'- aGC-CCAUGa-CGAAGCGCACCUguUGCu -3'
miRNA:   3'- gCGcGGUGCgcGCUUUGCGUGGG--GCG- -5'
26981 5' -60.1 NC_005809.1 + 19053 0.66 0.419708
Target:  5'- uGCGCCGC-C-UGGAAgGCGCgCUCGCg -3'
miRNA:   3'- gCGCGGUGcGcGCUUUgCGUG-GGGCG- -5'
26981 5' -60.1 NC_005809.1 + 2650 0.66 0.419708
Target:  5'- gGCGCUugcCGUGCGAGgucuugcgguACGCAUCgaGCa -3'
miRNA:   3'- gCGCGGu--GCGCGCUU----------UGCGUGGggCG- -5'
26981 5' -60.1 NC_005809.1 + 35470 0.66 0.419708
Target:  5'- aCGCaGuCCAucgUGCGCGuGGGCGCGCCguggguaggCCGCg -3'
miRNA:   3'- -GCG-C-GGU---GCGCGC-UUUGCGUGG---------GGCG- -5'
26981 5' -60.1 NC_005809.1 + 28691 0.66 0.419708
Target:  5'- gCGCGCCACGuCGUucacaaGGucGAUGCugUCgGCg -3'
miRNA:   3'- -GCGCGGUGC-GCG------CU--UUGCGugGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 20049 0.66 0.411444
Target:  5'- gCGCGCUGCGCGUGcucgcugcggggauGAugGCgggcaugaccagcccAgCCCGCc -3'
miRNA:   3'- -GCGCGGUGCGCGC--------------UUugCG---------------UgGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 23903 0.66 0.411444
Target:  5'- uGCGCCACGCccGCGGcuuccaugccggcauAggcgugauggucagGCGcCGCCCgGCg -3'
miRNA:   3'- gCGCGGUGCG--CGCU---------------U--------------UGC-GUGGGgCG- -5'
26981 5' -60.1 NC_005809.1 + 29974 0.66 0.410532
Target:  5'- gGCGCCAUGCGCaaauucaucGACGgcuauuucauCGCCgCGCa -3'
miRNA:   3'- gCGCGGUGCGCGcu-------UUGC----------GUGGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.