miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 10998 0.66 0.484966
Target:  5'- gCAGCgaaCGGCuGaCGAUCGagGCCGAGg- -3'
miRNA:   3'- -GUCGa--GCUG-C-GCUAGCagCGGCUCga -5'
27563 3' -58 NC_005882.1 + 24838 0.66 0.484966
Target:  5'- gGGCgcccaGCGAUCaGcCGCCGAGCa -3'
miRNA:   3'- gUCGagcugCGCUAG-CaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 588 0.66 0.484966
Target:  5'- uGGC-CGGCcauGCGGUCGgcaaucucgCGCCcGAGCUg -3'
miRNA:   3'- gUCGaGCUG---CGCUAGCa--------GCGG-CUCGA- -5'
27563 3' -58 NC_005882.1 + 33052 0.66 0.478804
Target:  5'- -uGCUCGACcugcgccuucagguaGCGcgUGcggcCGCCGAGCUg -3'
miRNA:   3'- guCGAGCUG---------------CGCuaGCa---GCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 24386 0.66 0.474719
Target:  5'- -uGCUUGAUGUaGGUCG-CGCCGAacGCg -3'
miRNA:   3'- guCGAGCUGCG-CUAGCaGCGGCU--CGa -5'
27563 3' -58 NC_005882.1 + 4883 0.66 0.474719
Target:  5'- gAGUUCGACGCGcggcgcaacgagGUCGUguuccgUGCCGcGGCg -3'
miRNA:   3'- gUCGAGCUGCGC------------UAGCA------GCGGC-UCGa -5'
27563 3' -58 NC_005882.1 + 12800 0.66 0.46458
Target:  5'- gGGCuucUCGGCGaacaGGUCGcCGgCGAGCg -3'
miRNA:   3'- gUCG---AGCUGCg---CUAGCaGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 14818 0.66 0.46458
Target:  5'- uCAGCagCGccauCGCGGccuugagCGcUCGCCGAGCUg -3'
miRNA:   3'- -GUCGa-GCu---GCGCUa------GC-AGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 23426 0.66 0.454556
Target:  5'- gCAGCUCGuCgGCGucaCGggCGUCGAGCg -3'
miRNA:   3'- -GUCGAGCuG-CGCua-GCa-GCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 23491 0.66 0.454556
Target:  5'- -cGCUCGACGCc--CGUgaCGCCGAcgaGCUg -3'
miRNA:   3'- guCGAGCUGCGcuaGCA--GCGGCU---CGA- -5'
27563 3' -58 NC_005882.1 + 21506 0.66 0.454556
Target:  5'- gAGCuuUCGACGaugucgguauUGAUCGUCGUCG-GCg -3'
miRNA:   3'- gUCG--AGCUGC----------GCUAGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 31521 0.66 0.44465
Target:  5'- ----cCGACGUGAcgcUCGUCGCCG-GCc -3'
miRNA:   3'- gucgaGCUGCGCU---AGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 31701 0.66 0.44465
Target:  5'- uUAGCgaccgucacgUCGACGUcgcccaGGUCGUCGaCGAGCg -3'
miRNA:   3'- -GUCG----------AGCUGCG------CUAGCAGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 30504 0.66 0.434867
Target:  5'- uGGgUCG-CGCGAUCGUacUCGAGCa -3'
miRNA:   3'- gUCgAGCuGCGCUAGCAgcGGCUCGa -5'
27563 3' -58 NC_005882.1 + 7838 0.66 0.431956
Target:  5'- -uGUUCGACgGCGAgagguUCGucgccuuggugaguUCGCCGGGCg -3'
miRNA:   3'- guCGAGCUG-CGCU-----AGC--------------AGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 32020 0.67 0.425209
Target:  5'- uCAGCggccgcCGACGCucgucggucaGGUUGUCGCguaCGAGCUg -3'
miRNA:   3'- -GUCGa-----GCUGCG----------CUAGCAGCG---GCUCGA- -5'
27563 3' -58 NC_005882.1 + 5341 0.67 0.425209
Target:  5'- uGGCgaggaauaCGACGUG-UCGUCgguGCCGGGCg -3'
miRNA:   3'- gUCGa-------GCUGCGCuAGCAG---CGGCUCGa -5'
27563 3' -58 NC_005882.1 + 3612 0.67 0.425209
Target:  5'- gCAGCgcgUCGACGCcgcuugcgucGAUcaCGUCGCCGAccgGCUu -3'
miRNA:   3'- -GUCG---AGCUGCG----------CUA--GCAGCGGCU---CGA- -5'
27563 3' -58 NC_005882.1 + 20883 0.67 0.41568
Target:  5'- -uGCUCGGCGCGGa---CGCCG-GCUa -3'
miRNA:   3'- guCGAGCUGCGCUagcaGCGGCuCGA- -5'
27563 3' -58 NC_005882.1 + 32776 0.67 0.41568
Target:  5'- gCAGCaacgccgcuugaUCGugGUGAUCG-CGCgauCGAGCa -3'
miRNA:   3'- -GUCG------------AGCugCGCUAGCaGCG---GCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.