miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 30576 0.66 0.547131
Target:  5'- uCGGcCGCGCgcaGCAUGAuuucCGACUUCGa-- -3'
miRNA:   3'- -GCC-GCGCGg--CGUGCU----GCUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 28319 0.66 0.547131
Target:  5'- -uGCGCgGCCGC-CGGCGGCaccuUGGg -3'
miRNA:   3'- gcCGCG-CGGCGuGCUGCUGaaguACC- -5'
27566 5' -57 NC_005882.1 + 23329 0.66 0.547131
Target:  5'- aGGCGUacgcgGUCGCugGACGugUugaaguugaUCGUGc -3'
miRNA:   3'- gCCGCG-----CGGCGugCUGCugA---------AGUACc -5'
27566 5' -57 NC_005882.1 + 32729 0.66 0.547131
Target:  5'- gCGGCGuUGCUGCGC-ACGACgu--UGGc -3'
miRNA:   3'- -GCCGC-GCGGCGUGcUGCUGaaguACC- -5'
27566 5' -57 NC_005882.1 + 25366 0.66 0.546054
Target:  5'- uCGGCGcCGCgcuuuccggcacgCGCACGACG-CUgaAUGGc -3'
miRNA:   3'- -GCCGC-GCG-------------GCGUGCUGCuGAagUACC- -5'
27566 5' -57 NC_005882.1 + 1741 0.66 0.53639
Target:  5'- -cGUGuCGCCcuuGCGCaGCGACUUCGUGa -3'
miRNA:   3'- gcCGC-GCGG---CGUGcUGCUGAAGUACc -5'
27566 5' -57 NC_005882.1 + 1567 0.66 0.53639
Target:  5'- gGGCGuCGCCGCGCagcucGACGAUUaCuUGa -3'
miRNA:   3'- gCCGC-GCGGCGUG-----CUGCUGAaGuACc -5'
27566 5' -57 NC_005882.1 + 3532 0.66 0.53639
Target:  5'- gGGCGUGCCGguCGucaccgcCGACgugaUCAaGGg -3'
miRNA:   3'- gCCGCGCGGCguGCu------GCUGa---AGUaCC- -5'
27566 5' -57 NC_005882.1 + 25006 0.66 0.525724
Target:  5'- gCGGCGCGUCGaCGCGACaaagcaauccuGAUgUCA-GGc -3'
miRNA:   3'- -GCCGCGCGGC-GUGCUG-----------CUGaAGUaCC- -5'
27566 5' -57 NC_005882.1 + 9498 0.66 0.525724
Target:  5'- uGGCGCGCUggcggccgcaaGCACGACG-CgcCA-GGa -3'
miRNA:   3'- gCCGCGCGG-----------CGUGCUGCuGaaGUaCC- -5'
27566 5' -57 NC_005882.1 + 3375 0.66 0.525724
Target:  5'- gCGG-GCGCUGCGCGGCcugGGCUaccgCGUGc -3'
miRNA:   3'- -GCCgCGCGGCGUGCUG---CUGAa---GUACc -5'
27566 5' -57 NC_005882.1 + 29362 0.66 0.515138
Target:  5'- uGGUGUGCuCGUACGcuuuggccuuGCGGCUUCGg-- -3'
miRNA:   3'- gCCGCGCG-GCGUGC----------UGCUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 23559 0.66 0.515138
Target:  5'- uGGgGCaaCCGCACGGCGGC---AUGGc -3'
miRNA:   3'- gCCgCGc-GGCGUGCUGCUGaagUACC- -5'
27566 5' -57 NC_005882.1 + 3343 0.67 0.50464
Target:  5'- uGGCcgaagagaucuCGCCGCGCGACGGCggCcgGc -3'
miRNA:   3'- gCCGc----------GCGGCGUGCUGCUGaaGuaCc -5'
27566 5' -57 NC_005882.1 + 30046 0.67 0.494236
Target:  5'- aCGGCgaGCGCCGaGCGcuucagcuCGACUUCGguuUGGu -3'
miRNA:   3'- -GCCG--CGCGGCgUGCu-------GCUGAAGU---ACC- -5'
27566 5' -57 NC_005882.1 + 11892 0.67 0.494236
Target:  5'- aGGaCGaucaCCGCGCGGCGAag-CAUGGc -3'
miRNA:   3'- gCC-GCgc--GGCGUGCUGCUgaaGUACC- -5'
27566 5' -57 NC_005882.1 + 21872 0.67 0.494236
Target:  5'- -cGCGCaGCCGgGCGACGAUggCAUc- -3'
miRNA:   3'- gcCGCG-CGGCgUGCUGCUGaaGUAcc -5'
27566 5' -57 NC_005882.1 + 22517 0.67 0.48393
Target:  5'- aCGGCGa-CCGCguucGCGGCGGuCUUCGguUGGu -3'
miRNA:   3'- -GCCGCgcGGCG----UGCUGCU-GAAGU--ACC- -5'
27566 5' -57 NC_005882.1 + 17206 0.67 0.48393
Target:  5'- gCGGaCGCGCUGCAgGaACGGCUUg---- -3'
miRNA:   3'- -GCC-GCGCGGCGUgC-UGCUGAAguacc -5'
27566 5' -57 NC_005882.1 + 31022 0.67 0.48393
Target:  5'- cCGGUGggaGCCGCGCuGCGAggUCGUGc -3'
miRNA:   3'- -GCCGCg--CGGCGUGcUGCUgaAGUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.