miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 16534 0.66 0.284032
Target:  5'- -uGCGCUGCgCGgAUGCUUGCcgacCAGCa -3'
miRNA:   3'- acUGCGGCGgGCgUGCGAGCGc---GUCG- -5'
27633 3' -62.5 NC_005882.1 + 28505 0.66 0.284032
Target:  5'- uUGAUGuuGgUCaGCACGCUCGaCG-AGCg -3'
miRNA:   3'- -ACUGCggCgGG-CGUGCGAGC-GCgUCG- -5'
27633 3' -62.5 NC_005882.1 + 12022 0.66 0.284032
Target:  5'- cGGCGCgguacgccagCGCCUcgGCGgGCacUUGCGCGGCc -3'
miRNA:   3'- aCUGCG----------GCGGG--CGUgCG--AGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12345 0.66 0.284032
Target:  5'- cGGCGCCGaUCgGCaACGCUgGUuCGGCc -3'
miRNA:   3'- aCUGCGGC-GGgCG-UGCGAgCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 17720 0.66 0.284032
Target:  5'- cGACGuUCGCCauu-UGCUCGgCGUAGCg -3'
miRNA:   3'- aCUGC-GGCGGgcguGCGAGC-GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 26308 0.66 0.277072
Target:  5'- aGGCucGCUGCagauCGCAcagaaguucauCGCuUCGCGCGGCg -3'
miRNA:   3'- aCUG--CGGCGg---GCGU-----------GCG-AGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 17834 0.66 0.277072
Target:  5'- gUGGCGCUG-UCGCACGacgagaucaUCGUGCgaGGCa -3'
miRNA:   3'- -ACUGCGGCgGGCGUGCg--------AGCGCG--UCG- -5'
27633 3' -62.5 NC_005882.1 + 27620 0.66 0.277072
Target:  5'- cGGCGUC-CCUGCAgCGCaUCaaCGCAGCu -3'
miRNA:   3'- aCUGCGGcGGGCGU-GCG-AGc-GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 18265 0.66 0.277072
Target:  5'- gUGACcaGCaccagCGCCUGCGCGauCUUGCGCAucGCg -3'
miRNA:   3'- -ACUG--CG-----GCGGGCGUGC--GAGCGCGU--CG- -5'
27633 3' -62.5 NC_005882.1 + 27107 0.66 0.277072
Target:  5'- gGAUGCUGCUgGCcCGCguccUGgGCGGCc -3'
miRNA:   3'- aCUGCGGCGGgCGuGCGa---GCgCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 6622 0.66 0.277072
Target:  5'- gGACGCCaGCCaugaaGU-CG-UCGUGCGGCg -3'
miRNA:   3'- aCUGCGG-CGGg----CGuGCgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28902 0.66 0.277072
Target:  5'- aGAacCGCCGUaauCgGCACGCUgGgguuCGCGGCa -3'
miRNA:   3'- aCU--GCGGCG---GgCGUGCGAgC----GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 27870 0.66 0.277072
Target:  5'- -cGCGgCGCUCGCGC-UUCGCG-AGCa -3'
miRNA:   3'- acUGCgGCGGGCGUGcGAGCGCgUCG- -5'
27633 3' -62.5 NC_005882.1 + 25736 0.66 0.277072
Target:  5'- gGugGCgGCCUGCcgaacaGCGCcgauuacggGCGCGGCc -3'
miRNA:   3'- aCugCGgCGGGCG------UGCGag-------CGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3579 0.66 0.272961
Target:  5'- -cGCGUCGCgUGCugGUcaucgugagccgagUGCGCAGCg -3'
miRNA:   3'- acUGCGGCGgGCGugCGa-------------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28035 0.66 0.270248
Target:  5'- gGAaGCCGa--GCugGCgaagcugCGCGCGGCg -3'
miRNA:   3'- aCUgCGGCgggCGugCGa------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28358 0.66 0.270248
Target:  5'- aGGCGCaGUCCGCGaug-CGCGUGGCc -3'
miRNA:   3'- aCUGCGgCGGGCGUgcgaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 15496 0.66 0.270248
Target:  5'- gUGAUGCUGUCCGaguCGUgguaUCGCG-AGCa -3'
miRNA:   3'- -ACUGCGGCGGGCgu-GCG----AGCGCgUCG- -5'
27633 3' -62.5 NC_005882.1 + 15730 0.66 0.266218
Target:  5'- cGGCGUCGCCguggCGCuuGCcgucguccuggccggUCGCGCGGa -3'
miRNA:   3'- aCUGCGGCGG----GCGugCG---------------AGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 25516 0.66 0.264886
Target:  5'- -uGCGCaacgGCCCGCGCcaucgcgucccccagGCggguaugccucgCGCGCAGCu -3'
miRNA:   3'- acUGCGg---CGGGCGUG---------------CGa-----------GCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.