miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 10890 0.66 0.543382
Target:  5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5'
28012 5' -58 NC_005887.1 + 39092 0.66 0.543382
Target:  5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3'
miRNA:   3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 32737 0.66 0.543382
Target:  5'- gGGUagCGCGGCGcucgcGUGCgcGCCGgCGCg -3'
miRNA:   3'- -CCG--GCGCUGCuu---CGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 11881 0.66 0.543382
Target:  5'- gGGCCGCGuc---GCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCugcuuCGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 4237 0.66 0.543382
Target:  5'- uGCuCGCGcCGA--CGCUcgGCCGCaCGCa -3'
miRNA:   3'- cCG-GCGCuGCUucGCGAa-UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 24974 0.66 0.543382
Target:  5'- cGGCCGCGAgggacagguCGggGUagUUGCCGa-GCg -3'
miRNA:   3'- -CCGGCGCU---------GCuuCGcgAAUGGCggCG- -5'
28012 5' -58 NC_005887.1 + 15770 0.66 0.543382
Target:  5'- aGGCCGCGgccGCGAAgGCGCagaagcagAUCGauGCg -3'
miRNA:   3'- -CCGGCGC---UGCUU-CGCGaa------UGGCggCG- -5'
28012 5' -58 NC_005887.1 + 42000 0.66 0.543382
Target:  5'- cGGCCuGCGGCccacgucGAGUGUc-GCCGCgGCg -3'
miRNA:   3'- -CCGG-CGCUGc------UUCGCGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 14768 0.66 0.539143
Target:  5'- cGCU-CGACGgcGCGCUcgcgcuguacuuCCGCUGCg -3'
miRNA:   3'- cCGGcGCUGCuuCGCGAau----------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 17864 0.66 0.532806
Target:  5'- -cUCGCGACGAcgugGGCcCggaaccuguCCGCCGCg -3'
miRNA:   3'- ccGGCGCUGCU----UCGcGaau------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 11067 0.66 0.532806
Target:  5'- cGGUCGagcuCGACGAGGCGaucgacGCgGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCUUCGCgaa---UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 7149 0.66 0.532806
Target:  5'- uGCUGCGcaACGAAuCGCc--CCGCCGUu -3'
miRNA:   3'- cCGGCGC--UGCUUcGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27647 0.66 0.532806
Target:  5'- cGCCGCGccCGGccCGC---CCGCCGCg -3'
miRNA:   3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5010 0.66 0.532806
Target:  5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3'
miRNA:   3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 40786 0.66 0.532806
Target:  5'- aGCCgGCGGuCGAGGUucgugGCggcgACgCGCCGCu -3'
miRNA:   3'- cCGG-CGCU-GCUUCG-----CGaa--UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 38054 0.66 0.532806
Target:  5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3'
miRNA:   3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5'
28012 5' -58 NC_005887.1 + 4854 0.66 0.532806
Target:  5'- -aCUGCGGCGAucaaGGaaCUgACCGCCGCc -3'
miRNA:   3'- ccGGCGCUGCU----UCgcGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34898 0.66 0.530699
Target:  5'- cGCUGCccuucucGACGAGgaacgucGCGCUgugcggaacuUGCCGUCGCc -3'
miRNA:   3'- cCGGCG-------CUGCUU-------CGCGA----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5094 0.66 0.529647
Target:  5'- gGGCUGUcgaucuaccuggacGACGAGGUGCUcGCCaagcucggcauGaCCGCg -3'
miRNA:   3'- -CCGGCG--------------CUGCUUCGCGAaUGG-----------C-GGCG- -5'
28012 5' -58 NC_005887.1 + 26829 0.66 0.526495
Target:  5'- uGCgCGUGcGCGAgcgGGCGCgucugccgguagccgUUGCCGCCGg -3'
miRNA:   3'- cCG-GCGC-UGCU---UCGCG---------------AAUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.