miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 4664 0.66 0.380798
Target:  5'- cGACGCgcagacCGCUGCGCAGa----CGGCg -3'
miRNA:   3'- cCUGCGa-----GCGGCGCGUCgugacGCCG- -5'
28025 3' -61 NC_005887.1 + 4093 0.66 0.380798
Target:  5'- aGGCGCagaucggcaUCGaguuCGCGCAGgACacGCGGCa -3'
miRNA:   3'- cCUGCG---------AGCg---GCGCGUCgUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 24682 0.66 0.380798
Target:  5'- cGACG-UCGCCaaGCGCGGCGaggaucgugccCUGCaGCu -3'
miRNA:   3'- cCUGCgAGCGG--CGCGUCGU-----------GACGcCG- -5'
28025 3' -61 NC_005887.1 + 28562 0.66 0.380798
Target:  5'- cGAUGUUCGCgGCGguGaC-CUGCuucacGGCg -3'
miRNA:   3'- cCUGCGAGCGgCGCguC-GuGACG-----CCG- -5'
28025 3' -61 NC_005887.1 + 29379 0.66 0.375608
Target:  5'- cGGGuCGCcgcuucggucugguaUUGCUGUagcgucGCGGCuuGCUGCGGCa -3'
miRNA:   3'- -CCU-GCG---------------AGCGGCG------CGUCG--UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 13996 0.66 0.375608
Target:  5'- cGACGaagaaugCGCCGCGCgccuccgcaaccgccGGCGCgccGcCGGCg -3'
miRNA:   3'- cCUGCga-----GCGGCGCG---------------UCGUGa--C-GCCG- -5'
28025 3' -61 NC_005887.1 + 41023 0.66 0.372174
Target:  5'- aGGCGUcuacuggCGCCGCGCGGUGCagGuCGaGCu -3'
miRNA:   3'- cCUGCGa------GCGGCGCGUCGUGa-C-GC-CG- -5'
28025 3' -61 NC_005887.1 + 19046 0.66 0.372174
Target:  5'- uGGGcCGCagUGCgGCGUuguucuucGGCgcggGCUGCGGCa -3'
miRNA:   3'- -CCU-GCGa-GCGgCGCG--------UCG----UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 15681 0.66 0.372174
Target:  5'- cGACcaGCUcacCGCCGCGCGGCcggaugauuccGCcGcCGGCg -3'
miRNA:   3'- cCUG--CGA---GCGGCGCGUCG-----------UGaC-GCCG- -5'
28025 3' -61 NC_005887.1 + 14583 0.66 0.372174
Target:  5'- uGGCGCucuaccUCGCCG-GC-GCGCU-CGGCa -3'
miRNA:   3'- cCUGCG------AGCGGCgCGuCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 28738 0.66 0.372174
Target:  5'- -cGCGCuaUCGCCGUuguaggugagacGCGGCAUUaCGGCc -3'
miRNA:   3'- ccUGCG--AGCGGCG------------CGUCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 2212 0.66 0.371319
Target:  5'- -aGCGCggcgCGCagCGCGCAccGCACgcuguaggcguccUGCGGCu -3'
miRNA:   3'- ccUGCGa---GCG--GCGCGU--CGUG-------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 29731 0.66 0.363684
Target:  5'- aGGAUcacgCGCCGCGCGuGCACggucuugccCGGCg -3'
miRNA:   3'- -CCUGcga-GCGGCGCGU-CGUGac-------GCCG- -5'
28025 3' -61 NC_005887.1 + 37206 0.66 0.363684
Target:  5'- cGGCGCgccgaCGUCGgGCAGCGCgGUcaugccgagcuuGGCg -3'
miRNA:   3'- cCUGCGa----GCGGCgCGUCGUGaCG------------CCG- -5'
28025 3' -61 NC_005887.1 + 18937 0.66 0.363684
Target:  5'- cGACGagcugaUCGaCGCGCu--GCUGCGGCu -3'
miRNA:   3'- cCUGCg-----AGCgGCGCGucgUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 25496 0.66 0.363684
Target:  5'- cGGCgGCUCGgacgaUgGCGCGGCGggugGCGGCa -3'
miRNA:   3'- cCUG-CGAGC-----GgCGCGUCGUga--CGCCG- -5'
28025 3' -61 NC_005887.1 + 14853 0.66 0.363684
Target:  5'- cGGGCGUgcacacCGCagcaacaGCGC-GCACcgcGCGGCa -3'
miRNA:   3'- -CCUGCGa-----GCGg------CGCGuCGUGa--CGCCG- -5'
28025 3' -61 NC_005887.1 + 29970 0.66 0.363684
Target:  5'- uGACGUUguUUGCGCGGUGCUGCucGGCc -3'
miRNA:   3'- cCUGCGAgcGGCGCGUCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 35818 0.66 0.363684
Target:  5'- -cGCGCUguguuccucgugCGCCGCGuCGGCGuagaucaucgcCUGCGGa -3'
miRNA:   3'- ccUGCGA------------GCGGCGC-GUCGU-----------GACGCCg -5'
28025 3' -61 NC_005887.1 + 41272 0.66 0.363684
Target:  5'- uGGCGCcgUCGaCCuGCGCAcgggcGCGCUGCuGCc -3'
miRNA:   3'- cCUGCG--AGC-GG-CGCGU-----CGUGACGcCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.