miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 40537 0.7 0.144797
Target:  5'- gCGGCAgCGACGaCGGUcugGcGCUCGCGCa -3'
miRNA:   3'- aGCCGU-GCUGCaGCCG---C-CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 37304 0.7 0.146333
Target:  5'- cCGGCGCGGCcauugccgugccuucGUUGGCuucGGUCUGCGCc -3'
miRNA:   3'- aGCCGUGCUG---------------CAGCCG---CCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 33252 0.69 0.148666
Target:  5'- -aGuaACGGCGcCGGU-GCCCGCGCUg -3'
miRNA:   3'- agCcgUGCUGCaGCCGcCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 12080 0.69 0.152629
Target:  5'- gCGGCACGAuCGUcgcgcCGGaCGGCaaGCGCc -3'
miRNA:   3'- aGCCGUGCU-GCA-----GCC-GCCGggCGCGa -5'
28032 5' -64.1 NC_005887.1 + 21215 0.69 0.152629
Target:  5'- aUUGGCACuagcauucguGGCGUUGGCGaGCaCCGUGUUu -3'
miRNA:   3'- -AGCCGUG----------CUGCAGCCGC-CG-GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 12077 0.69 0.15546
Target:  5'- gUCGGCACGuCGcUCGGUcaGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- -AGCCGUGCuGC-AGCCG--CCG--------------GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 25510 0.69 0.156688
Target:  5'- aUGGCGCGGCGggUGGCGGCauaauCGuCGCc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGg----GC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 40029 0.69 0.156688
Target:  5'- aUGGCGCGGCucgaGGCGGCCgGC-CUa -3'
miRNA:   3'- aGCCGUGCUGcag-CCGCCGGgCGcGA- -5'
28032 5' -64.1 NC_005887.1 + 21039 0.69 0.156688
Target:  5'- gUCGGCGCG--GUgGGCGuGCCCGUGa- -3'
miRNA:   3'- -AGCCGUGCugCAgCCGC-CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 28004 0.69 0.157924
Target:  5'- cCGGCACGcugcuucacgaucGCcgcguucaccugcuuGUCGGCgucGGCCUGCGCUu -3'
miRNA:   3'- aGCCGUGC-------------UG---------------CAGCCG---CCGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 9786 0.69 0.160844
Target:  5'- aUCGGCAUGACGggcgaugagUgGGUgauugGGCCCGCGa- -3'
miRNA:   3'- -AGCCGUGCUGC---------AgCCG-----CCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 15549 0.69 0.160844
Target:  5'- -gGGCgACGAC-UCGGCGcGCgcgaCCGCGCUc -3'
miRNA:   3'- agCCG-UGCUGcAGCCGC-CG----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 1435 0.69 0.160844
Target:  5'- cUCGGUGCGcGCGcgguagcccuUCGGCGGCUCGuCGUc -3'
miRNA:   3'- -AGCCGUGC-UGC----------AGCCGCCGGGC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 39269 0.69 0.160844
Target:  5'- gCGGC-CGugGUCGGCGuucagcGCCUGCa-- -3'
miRNA:   3'- aGCCGuGCugCAGCCGC------CGGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 17397 0.69 0.164669
Target:  5'- aCGcGCugGucgaucACGUCGGCGGCauggcgaagaacaUCGCGCUc -3'
miRNA:   3'- aGC-CGugC------UGCAGCCGCCG-------------GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 36923 0.69 0.169455
Target:  5'- -gGGCGCGugGUCGcgccggucgcuGCGGCgCCGCccGCc -3'
miRNA:   3'- agCCGUGCugCAGC-----------CGCCG-GGCG--CGa -5'
28032 5' -64.1 NC_005887.1 + 37578 0.69 0.169455
Target:  5'- cCGGCugG-CGUCaGCuuCCCGCGCUc -3'
miRNA:   3'- aGCCGugCuGCAGcCGccGGGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 40753 0.69 0.169455
Target:  5'- -aGGCGauCGcCGUUGGCGcGCCgCGCGCc -3'
miRNA:   3'- agCCGU--GCuGCAGCCGC-CGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 35830 0.69 0.169455
Target:  5'- cUCGuGCGCcGCGUCGGCGuagaucaucGCCUGCGg- -3'
miRNA:   3'- -AGC-CGUGcUGCAGCCGC---------CGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 27406 0.68 0.173913
Target:  5'- gCGGCGCGuCGUaCGGCaGCgCGCGg- -3'
miRNA:   3'- aGCCGUGCuGCA-GCCGcCGgGCGCga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.