miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 13968 0.66 0.63431
Target:  5'- cGCGCggucacggugcaccUGACGUuCCCGACGAagaaugcgccGCGCGc -3'
miRNA:   3'- -UGCGa-------------AUUGCGuGGGCUGCU----------CGCGCu -5'
28038 3' -56 NC_005887.1 + 8368 0.66 0.629858
Target:  5'- -aGCcu-GCGaaaGCCUGACGcagAGCGCGAc -3'
miRNA:   3'- ugCGaauUGCg--UGGGCUGC---UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 19141 0.66 0.629858
Target:  5'- gGCGUggcccuugaagUAGcCGCcCCCGgccgugaucGCGAGCGCGAc -3'
miRNA:   3'- -UGCGa----------AUU-GCGuGGGC---------UGCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 15321 0.66 0.629858
Target:  5'- uGCGCggucGCGCGCUCGcCGAgguuGCGCa- -3'
miRNA:   3'- -UGCGaau-UGCGUGGGCuGCU----CGCGcu -5'
28038 3' -56 NC_005887.1 + 29188 0.66 0.629858
Target:  5'- cCGCUgucugcGCGCGCgCGGCaAGCGaCGAg -3'
miRNA:   3'- uGCGAau----UGCGUGgGCUGcUCGC-GCU- -5'
28038 3' -56 NC_005887.1 + 27142 0.66 0.628746
Target:  5'- gGCGauc-ACGCGgCCGAacggccaCGGGCGCGGg -3'
miRNA:   3'- -UGCgaauUGCGUgGGCU-------GCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 18369 0.66 0.618732
Target:  5'- cCGCguaGACgGCGCgCCGGCGcuCGCGAa -3'
miRNA:   3'- uGCGaa-UUG-CGUG-GGCUGCucGCGCU- -5'
28038 3' -56 NC_005887.1 + 7688 0.66 0.618732
Target:  5'- -gGUUcuucgGugGCGCCCGcaaguACGAGgGCGAu -3'
miRNA:   3'- ugCGAa----UugCGUGGGC-----UGCUCgCGCU- -5'
28038 3' -56 NC_005887.1 + 871 0.66 0.618732
Target:  5'- gACGCguggcccGCGcCGCCgGACGAGUcagGCGGc -3'
miRNA:   3'- -UGCGaau----UGC-GUGGgCUGCUCG---CGCU- -5'
28038 3' -56 NC_005887.1 + 18435 0.66 0.618732
Target:  5'- gACGCUgaucGGCGCGauCUCGACGcAG-GCGAa -3'
miRNA:   3'- -UGCGAa---UUGCGU--GGGCUGC-UCgCGCU- -5'
28038 3' -56 NC_005887.1 + 6444 0.66 0.618732
Target:  5'- cGCGCcgAgaucgaaguGCGCgACCUGAaguaCGGGCGCGGc -3'
miRNA:   3'- -UGCGaaU---------UGCG-UGGGCU----GCUCGCGCU- -5'
28038 3' -56 NC_005887.1 + 28479 0.66 0.612062
Target:  5'- cCGCUUcagcucgacgaaguaGACGCGCgCCGGCGGGaagaugacgaUGCGGu -3'
miRNA:   3'- uGCGAA---------------UUGCGUG-GGCUGCUC----------GCGCU- -5'
28038 3' -56 NC_005887.1 + 26200 0.66 0.607618
Target:  5'- cGCGCacucGGCGCGCCgGugGuuGGCGgGGu -3'
miRNA:   3'- -UGCGaa--UUGCGUGGgCugC--UCGCgCU- -5'
28038 3' -56 NC_005887.1 + 9545 0.66 0.607618
Target:  5'- cCGCUguuCGUGCCCGugaaGCGGcGCGCGc -3'
miRNA:   3'- uGCGAauuGCGUGGGC----UGCU-CGCGCu -5'
28038 3' -56 NC_005887.1 + 2454 0.66 0.607618
Target:  5'- uGCGCU--ACgGCGCCguCGACGAGgCGCu- -3'
miRNA:   3'- -UGCGAauUG-CGUGG--GCUGCUC-GCGcu -5'
28038 3' -56 NC_005887.1 + 40145 0.66 0.607618
Target:  5'- cGCGCU--GCGCGCCgCGcucgccGCGugugagcuGCGCGAc -3'
miRNA:   3'- -UGCGAauUGCGUGG-GC------UGCu-------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 15897 0.66 0.607618
Target:  5'- uGCGCUcGACGCGCagcuggCCGACcugcguuccGCGCGGg -3'
miRNA:   3'- -UGCGAaUUGCGUG------GGCUGcu-------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 3188 0.66 0.607618
Target:  5'- -aGCUgc-CGCGCCCGgacaGCGAGaagggcCGCGAg -3'
miRNA:   3'- ugCGAauuGCGUGGGC----UGCUC------GCGCU- -5'
28038 3' -56 NC_005887.1 + 26440 0.66 0.606507
Target:  5'- cGCGCggAACGCaggucggccagcuGCgCGuCGAGCGCa- -3'
miRNA:   3'- -UGCGaaUUGCG-------------UGgGCuGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 4675 0.66 0.596525
Target:  5'- cCGCU--GCGCAgacggcgagggUCUGAUGGGCGCGc -3'
miRNA:   3'- uGCGAauUGCGU-----------GGGCUGCUCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.