miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 5' -61.7 NC_005887.1 + 24879 0.66 0.376898
Target:  5'- aGGCGg--CGGCCGAUG-CCGCgCgcuCGg -3'
miRNA:   3'- -CCGCagaGCCGGCUGCcGGCG-Gau-GC- -5'
28067 5' -61.7 NC_005887.1 + 6240 0.66 0.368471
Target:  5'- cGGaCG-UUCGaaGUCGACgaggaaauGGCCGCCUACGu -3'
miRNA:   3'- -CC-GCaGAGC--CGGCUG--------CCGGCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 16504 0.66 0.360175
Target:  5'- cGGCGaugUCgcaGGCCGAuCGcGUCGCCgccgGCGc -3'
miRNA:   3'- -CCGC---AGag-CCGGCU-GC-CGGCGGa---UGC- -5'
28067 5' -61.7 NC_005887.1 + 25823 0.66 0.360175
Target:  5'- cGCGcccaCUCGgcGCCGGCGGCgacgcgaucgGCCUGCGa -3'
miRNA:   3'- cCGCa---GAGC--CGGCUGCCGg---------CGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 17914 0.66 0.35201
Target:  5'- cGGCGUCacaGGuuGgACGGaCGCgCUACGc -3'
miRNA:   3'- -CCGCAGag-CCggC-UGCCgGCG-GAUGC- -5'
28067 5' -61.7 NC_005887.1 + 11221 0.66 0.350392
Target:  5'- aGGCGUgCgccggaaauauaCGGUCGAUGGCCGCg-ACa -3'
miRNA:   3'- -CCGCA-Ga-----------GCCGGCUGCCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 11532 0.66 0.343976
Target:  5'- uGGaCGUCgaacUGGCCGA-GGCCGCggUGCGc -3'
miRNA:   3'- -CC-GCAGa---GCCGGCUgCCGGCGg-AUGC- -5'
28067 5' -61.7 NC_005887.1 + 27341 0.66 0.343976
Target:  5'- cGCGagcaUCaGCUcgGGCGGCaCGCCUGCGg -3'
miRNA:   3'- cCGCag--AGcCGG--CUGCCG-GCGGAUGC- -5'
28067 5' -61.7 NC_005887.1 + 34243 0.66 0.336076
Target:  5'- cGGCGcCUCGGCgagcgCGGCGaGCUGCgcGCGc -3'
miRNA:   3'- -CCGCaGAGCCG-----GCUGC-CGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 33075 0.66 0.336076
Target:  5'- cGGCGUCgcCGuGCCGACcGCCGUgcACa -3'
miRNA:   3'- -CCGCAGa-GC-CGGCUGcCGGCGgaUGc -5'
28067 5' -61.7 NC_005887.1 + 32413 0.66 0.336076
Target:  5'- -uCGUCgacgUGGCCGGCGGCgaugugGCCgGCGg -3'
miRNA:   3'- ccGCAGa---GCCGGCUGCCGg-----CGGaUGC- -5'
28067 5' -61.7 NC_005887.1 + 30201 0.67 0.328309
Target:  5'- cGCGaucgucaccaaUCUgGcGCgCGACGGCgGCCUGCu -3'
miRNA:   3'- cCGC-----------AGAgC-CG-GCUGCCGgCGGAUGc -5'
28067 5' -61.7 NC_005887.1 + 1494 0.67 0.328309
Target:  5'- cGGCG-CUCGcGCgGcGCGGCCGU--GCGg -3'
miRNA:   3'- -CCGCaGAGC-CGgC-UGCCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 32293 0.67 0.328309
Target:  5'- gGGCGaUCgUCGggccaGCCGGCGcGCCGCagUGCGu -3'
miRNA:   3'- -CCGC-AG-AGC-----CGGCUGC-CGGCGg-AUGC- -5'
28067 5' -61.7 NC_005887.1 + 25062 0.67 0.320675
Target:  5'- cGGCGUUUgCGcGCgCGGC-GCCGCCcgACGu -3'
miRNA:   3'- -CCGCAGA-GC-CG-GCUGcCGGCGGa-UGC- -5'
28067 5' -61.7 NC_005887.1 + 7006 0.67 0.320675
Target:  5'- gGGCGUgaagCUCguGGCCGGCcGCCGCg-GCGc -3'
miRNA:   3'- -CCGCA----GAG--CCGGCUGcCGGCGgaUGC- -5'
28067 5' -61.7 NC_005887.1 + 11397 0.67 0.320675
Target:  5'- aGCG-CUggCGGCCGGC-GCCGCCaagGCa -3'
miRNA:   3'- cCGCaGA--GCCGGCUGcCGGCGGa--UGc -5'
28067 5' -61.7 NC_005887.1 + 22198 0.67 0.320675
Target:  5'- -cUGUC-CGGCgCGGCGGUCGCauauUACGg -3'
miRNA:   3'- ccGCAGaGCCG-GCUGCCGGCGg---AUGC- -5'
28067 5' -61.7 NC_005887.1 + 38474 0.67 0.320675
Target:  5'- uGGCGUCgUauGCCgGGCuGCCGCCgUACa -3'
miRNA:   3'- -CCGCAG-AgcCGG-CUGcCGGCGG-AUGc -5'
28067 5' -61.7 NC_005887.1 + 33483 0.67 0.315411
Target:  5'- cGGCGUCgcgaucucgacgggCGcGCCGGCGuucacaaGCUGCCcGCGa -3'
miRNA:   3'- -CCGCAGa-------------GC-CGGCUGC-------CGGCGGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.